WormBase Tree Display for Variation: WBVar00066211
expand all nodes | collapse all nodes | view schema
WBVar00066211 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00066211 | ||||
Other_name | cbs41498 | |||||
cb41498 | Paper_evidence | WBPaper00055507 | ||||
HGVSg | chrII:g.184848T>A | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc0022b | ||
Flanking_sequences | gagaagaagagacacttgtgagcta | ttatttgaaaaaagtttcaaattaa | ||||
Mapping_target | cb25.fpc0022b | |||||
Type_of_mutation | Substitution | T | A | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | AATT | Sse9I, TasI, Tsp509I, TspEI | 171 169 110 107 88 76 60 41 39 34 29 26 23 11 9 7 | ||
Polymorphic_strain_digest | AATT | Sse9I, TasI, Tsp509I, TspEI | 171 169 110 107 76 67 60 41 39 34 29 26 23 21 11 9 7 | |||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00024305 | ||||
Transcript | CBG01010.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | CBG01010.1:c.173+9T>A | |||||
Intron_number | 2/6 | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |