WormBase Tree Display for Variation: WBVar00077056
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| WBVar00077056 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00077056 | |||
| Other_name | snp_F11D5[2] | ||||
| haw101416 | |||||
| cewivar00271752 | |||||
| F11D5.3b.1:c.1764-14T>G | |||||
| F11D5.3a.1:c.1854-14T>G | |||||
| F11D5.3b.2:c.1764-14T>G | |||||
| HGVSg | CHROMOSOME_X:g.3323031T>G | ||||
| Sequence_details | SMap | S_parent | Sequence | F11D5 | |
| Flanking_sequences | atgtgtctcagaaatgttttgtata | tttaaagtttcagaacctcccaatg | |||
| Mapping_target | F11D5 | ||||
| Type_of_mutation | Substitution | T | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022868 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022878 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| History | Acquires_merge | WBVar00244150 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00017381 | |||
| Transcript | F11D5.3b.2 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F11D5.3b.2:c.1764-14T>G | ||||
| Intron_number | 12/14 | ||||
| F11D5.3b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F11D5.3b.1:c.1764-14T>G | ||||
| Intron_number | 11/14 | ||||
| F11D5.3a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F11D5.3a.1:c.1854-14T>G | ||||
| Intron_number | 12/15 | ||||
| Reference | WBPaper00004703 | ||||
| Remark | [20081124 db] this Variation was previously named hw101416 | ||||
| Method | WGS_Hawaiian_Waterston |
