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WormBase Tree Display for Variation: WBVar00078340

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Name Class

WBVar00078340NamePublic_nameWBVar00078340
Other_namehaw102700
cewivar00125657
F39C12.3b.1:c.199-560C>T
F39C12.3a.3:c.127-560C>T
F39C12.3a.2:c.127-560C>T
F39C12.3a.1:c.127-560C>T
HGVSgCHROMOSOME_X:g.4870142G>A
Sequence_detailsSMapS_parentSequenceF39C12
Flanking_sequencesccgtaaatttaaaactctttttgatacatttttgttgaagtttgctaaaa
Mapping_targetF39C12
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (12)
LaboratoryRW
PersonWBPerson1562
AnalysisWGS_Hawaiian_Waterston
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00006640
TranscriptF39C12.3a.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF39C12.3a.3:c.127-560C>T
Intron_number3/10
F39C12.3a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF39C12.3a.2:c.127-560C>T
Intron_number2/9
F39C12.3a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF39C12.3a.1:c.127-560C>T
Intron_number3/10
F39C12.3b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF39C12.3b.1:c.199-560C>T
Intron_number3/9
Remark[20081124 db] this Variation was previously named hw102700
MethodWGS_Hawaiian_Waterston