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WormBase Tree Display for Variation: WBVar00080776

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Name Class

WBVar00080776NamePublic_nameWBVar00080776
Other_namehaw105136
cewivar00274697
C54D2.5a.3:c.2500-132G>A
C54D2.5c.1:c.2500-132G>A
C54D2.5a.1:c.2500-132G>A
C54D2.5g.1:c.2520+17G>A
C54D2.5d.1:c.2643+17G>A
C54D2.5a.2:c.2500-132G>A
C54D2.5e.1:c.2520+17G>A
HGVSgCHROMOSOME_X:g.7854034C>T
Sequence_detailsSMapS_parentSequenceC54D2
Flanking_sequencescatctttgactaactatatgaaaggttttttcaaaagttacctgaaacac
Mapping_targetC54D2
Type_of_mutationSubstitutionCT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisMillion_mutation_project_reanalysis
WGS_Hawaiian_Waterston
LaboratoryRW
PersonWBPerson1562
AnalysisWGS_Hawaiian_Waterston
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00000367
TranscriptC54D2.5a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC54D2.5a.1:c.2500-132G>A
Intron_number20/31
C54D2.5g.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC54D2.5g.1:c.2520+17G>A
Intron_number18/28
C54D2.5a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC54D2.5a.2:c.2500-132G>A
Intron_number21/32
C54D2.5c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC54D2.5c.1:c.2500-132G>A
Intron_number19/30
C54D2.5a.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC54D2.5a.3:c.2500-132G>A
Intron_number19/30
C54D2.5d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC54D2.5d.1:c.2643+17G>A
Intron_number20/31
C54D2.5e.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC54D2.5e.1:c.2520+17G>A
Intron_number19/30
Remark[20081124 db] this Variation was previously named hw105136
MethodWGS_Hawaiian_Waterston