WormBase Tree Display for Variation: WBVar00080776
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WBVar00080776 | Name | Public_name | WBVar00080776 | ||
---|---|---|---|---|---|
Other_name | haw105136 | ||||
cewivar00274697 | |||||
C54D2.5a.3:c.2500-132G>A | |||||
C54D2.5c.1:c.2500-132G>A | |||||
C54D2.5a.1:c.2500-132G>A | |||||
C54D2.5g.1:c.2520+17G>A | |||||
C54D2.5d.1:c.2643+17G>A | |||||
C54D2.5a.2:c.2500-132G>A | |||||
C54D2.5e.1:c.2520+17G>A | |||||
HGVSg | CHROMOSOME_X:g.7854034C>T | ||||
Sequence_details | SMap | S_parent | Sequence | C54D2 | |
Flanking_sequences | catctttgactaactatatgaaagg | ttttttcaaaagttacctgaaacac | |||
Mapping_target | C54D2 | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
WGS_Hawaiian_Waterston | |||||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00000367 | |||
Transcript | C54D2.5a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | C54D2.5a.1:c.2500-132G>A | ||||
Intron_number | 20/31 | ||||
C54D2.5g.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C54D2.5g.1:c.2520+17G>A | ||||
Intron_number | 18/28 | ||||
C54D2.5a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C54D2.5a.2:c.2500-132G>A | ||||
Intron_number | 21/32 | ||||
C54D2.5c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C54D2.5c.1:c.2500-132G>A | ||||
Intron_number | 19/30 | ||||
C54D2.5a.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C54D2.5a.3:c.2500-132G>A | ||||
Intron_number | 19/30 | ||||
C54D2.5d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C54D2.5d.1:c.2643+17G>A | ||||
Intron_number | 20/31 | ||||
C54D2.5e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C54D2.5e.1:c.2520+17G>A | ||||
Intron_number | 19/30 | ||||
Remark | [20081124 db] this Variation was previously named hw105136 | ||||
Method | WGS_Hawaiian_Waterston |