WormBase Tree Display for Variation: WBVar00080780
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WBVar00080780 | Name | Public_name | WBVar00080780 | ||
---|---|---|---|---|---|
Other_name | pas4017 | ||||
haw105140 | |||||
cewivar00058641 | |||||
C54D2.5a.3:c.638+203T>A | |||||
C54D2.5a.2:c.638+203T>A | |||||
C54D2.5d.1:c.638+203T>A | |||||
C54D2.5c.1:c.638+203T>A | |||||
C54D2.5g.1:c.638+203T>A | |||||
C54D2.5e.1:c.638+203T>A | |||||
C54D2.5a.1:c.638+203T>A | |||||
HGVSg | CHROMOSOME_X:g.7857122A>T | ||||
Sequence_details | SMap | S_parent | Sequence | C54D2 | |
Flanking_sequences | tatcattatgaaattactttttttt | aatacttttttttactaattcgtta | |||
Mapping_target | C54D2 | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (35) | |||||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
WBPerson6900 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
Million_mutation_project_reanalysis | |||||
WGS_Pasadena_Quinlan | |||||
History | Acquires_merge | WBVar00099158 | |||
Status | Live | ||||
Affects | Gene | WBGene00000367 | |||
Transcript | C54D2.5a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | C54D2.5a.1:c.638+203T>A | ||||
Intron_number | 8/31 | ||||
C54D2.5g.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C54D2.5g.1:c.638+203T>A | ||||
Intron_number | 6/28 | ||||
C54D2.5a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C54D2.5a.2:c.638+203T>A | ||||
Intron_number | 9/32 | ||||
C54D2.5c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C54D2.5c.1:c.638+203T>A | ||||
Intron_number | 7/30 | ||||
C54D2.5a.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C54D2.5a.3:c.638+203T>A | ||||
Intron_number | 7/30 | ||||
C54D2.5d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C54D2.5d.1:c.638+203T>A | ||||
Intron_number | 7/31 | ||||
C54D2.5e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C54D2.5e.1:c.638+203T>A | ||||
Intron_number | 7/30 | ||||
Remark | [20081124 db] this Variation was previously named hw105140 | ||||
Method | WGS_Hawaiian_Waterston |