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WormBase Tree Display for Variation: WBVar00080780

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Name Class

WBVar00080780NamePublic_nameWBVar00080780
Other_namepas4017
haw105140
cewivar00058641
C54D2.5a.3:c.638+203T>A
C54D2.5a.2:c.638+203T>A
C54D2.5d.1:c.638+203T>A
C54D2.5c.1:c.638+203T>A
C54D2.5g.1:c.638+203T>A
C54D2.5e.1:c.638+203T>A
C54D2.5a.1:c.638+203T>A
HGVSgCHROMOSOME_X:g.7857122A>T
Sequence_detailsSMapS_parentSequenceC54D2
Flanking_sequencestatcattatgaaattacttttttttaatacttttttttactaattcgtta
Mapping_targetC54D2
Type_of_mutationSubstitutionAT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (35)
LaboratoryRW
PersonWBPerson1562
WBPerson6900
AnalysisWGS_Hawaiian_Waterston
Million_mutation_project_reanalysis
WGS_Pasadena_Quinlan
HistoryAcquires_mergeWBVar00099158
StatusLive
AffectsGeneWBGene00000367
TranscriptC54D2.5a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC54D2.5a.1:c.638+203T>A
Intron_number8/31
C54D2.5g.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC54D2.5g.1:c.638+203T>A
Intron_number6/28
C54D2.5a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC54D2.5a.2:c.638+203T>A
Intron_number9/32
C54D2.5c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC54D2.5c.1:c.638+203T>A
Intron_number7/30
C54D2.5a.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC54D2.5a.3:c.638+203T>A
Intron_number7/30
C54D2.5d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC54D2.5d.1:c.638+203T>A
Intron_number7/31
C54D2.5e.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC54D2.5e.1:c.638+203T>A
Intron_number7/30
Remark[20081124 db] this Variation was previously named hw105140
MethodWGS_Hawaiian_Waterston