WormBase Tree Display for Variation: WBVar00088136
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| WBVar00088136 | Name | Public_name | ju2 | ||||
|---|---|---|---|---|---|---|---|
| Other_name | F35D2.5a.1:c.1471C>T | ||||||
| CE33391:p.Arg491Ter | |||||||
| F35D2.5c.2:c.673C>T | |||||||
| F35D2.5c.1:c.673C>T | |||||||
| CE33392:p.Arg225Ter | |||||||
| HGVSg | CHROMOSOME_II:g.7588281G>A | ||||||
| Sequence_details | SMap | S_parent | Sequence | R07G3 | |||
| Flanking_sequences | taaacttttttgttttcagagcaacaattt | gattgtctaatggaagtccgggaagaactg | |||||
| Mapping_target | R07G3 | ||||||
| Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00005543 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Laboratory | CZ | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00006363 | |||||
| Transcript | F35D2.5c.1 | VEP_consequence | stop_gained | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | F35D2.5c.1:c.673C>T | ||||||
| HGVSp | CE33392:p.Arg225Ter | ||||||
| cDNA_position | 676 | ||||||
| CDS_position | 673 | ||||||
| Protein_position | 225 | ||||||
| Exon_number | 6/11 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| F35D2.5a.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | F35D2.5a.1:c.1471C>T | ||||||
| HGVSp | CE33391:p.Arg491Ter | ||||||
| cDNA_position | 1475 | ||||||
| CDS_position | 1471 | ||||||
| Protein_position | 491 | ||||||
| Exon_number | 14/19 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| F35D2.5c.2 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | F35D2.5c.2:c.673C>T | ||||||
| HGVSp | CE33392:p.Arg225Ter | ||||||
| cDNA_position | 1249 | ||||||
| CDS_position | 673 | ||||||
| Protein_position | 225 | ||||||
| Exon_number | 11/16 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| Interactor (20) | |||||||
| Isolation | Mutagen | EMS | Paper_evidence | WBPaper00005543 | |||
| Genetics | Interpolated_map_position | II | 0.504799 | ||||
| Mapping_data | In_multi_point | 4715 | |||||
| Description (2) | |||||||
| Reference | WBPaper00005543 | ||||||
| Remark | Flanking sequences refer to F35D2.5c isoform | Curator_confirmed | WBPerson1845 | ||||
| Method | Substitution_allele |
