WormBase Tree Display for Variation: WBVar00088276

WBVar00088276 Evidence: Paper_evidence: WBPaper00004727
  Name: Public_name: ks5
    Other_name: C40H5.5b.1:c.516+1G>A
      C40H5.5a.1:c.600+1G>A
    HGVSg: CHROMOSOME_X:g.11766925C>T
  Sequence_details: SMap: S_parent: Sequence: C40H5
    Flanking_sequences: atttttcatcatgcgtgtttcgtatgtttt tgagtttttaacaattttaaacaaattgtt
    Mapping_target: C40H5
    Type_of_mutation: Substitution: g a
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00007506
      WBStrain00052442
    Laboratory: FK
    Status: Live
  Affects: Gene: WBGene00006654
    Transcript: C40H5.5b.1 VEP_consequence: splice_donor_variant
        VEP_impact: HIGH
        HGVSc: C40H5.5b.1:c.516+1G>A
        Intron_number: 4/8
      C40H5.5a.1 VEP_consequence: splice_donor_variant
        VEP_impact: HIGH
        HGVSc: C40H5.5a.1:c.600+1G>A
        Intron_number: 5/10
    Interactor: WBInteraction000003413
      WBInteraction000003414
      WBInteraction000003415
      WBInteraction000003416
      WBInteraction000503643
      WBInteraction000521604
      WBInteraction000554842
      WBInteraction000554843
      WBInteraction000554844
      WBInteraction000569170
  Genetics: Interpolated_map_position: X 6.71664
  Description: Phenotype (7)
    Phenotype_not_observed: WBPhenotype:0000637 Person_evidence: WBPerson261
        Curator_confirmed: WBPerson712
        Remark: No obvious abnormalities in dauer formation. Person_evidence: WBPerson261
            Curator_confirmed: WBPerson712
      WBPhenotype:0000648 Person_evidence: WBPerson261
        Curator_confirmed: WBPerson712
        Remark: No obvious abnormalities in male mating. Person_evidence: WBPerson261
            Curator_confirmed: WBPerson712
      WBPhenotype:0000663 Person_evidence: WBPerson261
        Curator_confirmed: WBPerson712
        Remark: No obvious abnormalities in osmotic avoidance. Person_evidence: WBPerson261
            Curator_confirmed: WBPerson712
      WBPhenotype:0001462 Person_evidence: WBPerson261
        Curator_confirmed: WBPerson712
        Remark: No obvious abnormalities in chemotaxis to NaCl. Person_evidence: WBPerson261
            Curator_confirmed: WBPerson712
      WBPhenotype:0001661 Paper_evidence: WBPaper00003760
        Curator_confirmed: WBPerson2021
        Remark: Asymmetric expression in AWC was normal Paper_evidence: WBPaper00003760
            Curator_confirmed: WBPerson2021
  Reference (16)
  Remark: ks5 is mutated at the splice donor site at exon 5 (G->A) [030414 ck1]
  Method: Substitution_allele