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WormBase Tree Display for Variation: WBVar00089466

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Name Class

WBVar00089466EvidencePaper_evidenceWBPaper00003778
NamePublic_namen378
Other_name (14)
HGVSgCHROMOSOME_IV:g.11059404G>A
Sequence_detailsSMapS_parentSequenceF36H1
Flanking_sequencesttttccattcaaatatcaataaaagtttcaaatcgtgtctcccttcgtggtttcgtcaag
Mapping_targetF36H1
Type_of_mutationSubstitutiongaPaper_evidenceWBPaper00003778
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00026727
LaboratoryMT
StatusLive
Linked_toWBVar00089467
AffectsGeneWBGene00002992
Transcript (11)
Interactor (15)
GeneticsInterpolated_map_positionIV4.82045
DescriptionPhenotypeWBPhenotype:0000219Paper_evidenceWBPaper00031110
Curator_confirmedWBPerson712
RemarkUnderinduced animals (worms with fewer than three VPCs induced) were detected.Paper_evidenceWBPaper00031110
Curator_confirmedWBPerson712
Phenotype_assayTemperature20Paper_evidenceWBPaper00031110
Curator_confirmedWBPerson712
WBPhenotype:0000640Paper_evidenceWBPaper00002811
Curator_confirmedWBPerson712
Temperature_sensitiveHeat_sensitive25Paper_evidenceWBPaper00002811
Curator_confirmedWBPerson712
WBPhenotype:0000698Paper_evidenceWBPaper00000762
WBPaper00002375
Curator_confirmedWBPerson2021
WBPerson712
Remark14 percent of Vul hermaphrodites have 1 or more ventral protrusions. The penetrance of the Vul phenotype in n378 hermaphrodites that pass through a dauer larval stage drops to 70 percent. Additionally, 42 percent of these post-dauer Vul hermaphrodites have 1 or more ventral protrusions.Paper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
On average less than one VPC adopts a vulval fate.Paper_evidenceWBPaper00002375
Curator_confirmedWBPerson712
PenetranceHighPaper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
Range9797Paper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
RecessivePaper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
EQ_annotationsLife_stageWBls:0000057PATO:0000460Paper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
Phenotype_assayTemperature20Paper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
Phenotype_not_observedWBPhenotype:0001278Paper_evidenceWBPaper00057074
Curator_confirmedWBPerson712
Remarkneurons did not show a loss in unc-25::GFP expressionPaper_evidenceWBPaper00057074
Curator_confirmedWBPerson712
ImageWBPicture0000014913Paper_evidenceWBPaper00057074
Curator_confirmedWBPerson712
EQ_annotationsAnatomy_termWBbt:0005027PATO:0000460Paper_evidenceWBPaper00057074
Curator_confirmedWBPerson712
WBbt:0005021PATO:0000460Paper_evidenceWBPaper00057074
Curator_confirmedWBPerson712
Reference (17)
MethodSubstitution_allele