WormBase Tree Display for Variation: WBVar00089587
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| WBVar00089587 | Name | Public_name | n536 | ||
|---|---|---|---|---|---|
| Other_name | T25C12.1b.1:c.*298_*904del | ||||
| T25C12.1a.1:c.*298_*904del | |||||
| HGVSg | CHROMOSOME_X:g.11484565_11485171del | ||||
| Sequence_details | SMap | S_parent | Sequence | T25C12 | |
| Flanking_sequences | tttatccaaacctatactgatgtatattgt | ttcagttgtttggggccaaatatctatatc | |||
| Mapping_target | T25C12 | ||||
| Type_of_mutation | Deletion | ||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00026801 | ||||
| WBStrain00026802 | |||||
| WBStrain00026862 | |||||
| WBStrain00026903 | |||||
| WBStrain00040207 | |||||
| WBStrain00040208 | |||||
| WBStrain00040210 | |||||
| Laboratory | MT | ||||
| Status | Live | ||||
| Linked_to | WBVar00089588 | ||||
| WBVar00089589 | |||||
| WBVar00089590 | |||||
| WBVar00089592 | |||||
| Affects | Gene | WBGene00220093 | |||
| WBGene00003003 | |||||
| WBGene00220094 | |||||
| Transcript | T25C12.1b.1 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T25C12.1b.1:c.*298_*904del | ||||
| cDNA_position | 2043-2649 | ||||
| Exon_number | 12/12 | ||||
| T25C12.12 | VEP_consequence | transcript_ablation | |||
| VEP_impact | HIGH | ||||
| Exon_number | 1/1 | ||||
| T25C12.11 | VEP_consequence | non_coding_transcript_exon_variant | |||
| VEP_impact | MODIFIER | ||||
| cDNA_position | 73-? | ||||
| Exon_number | 1/1 | ||||
| T25C12.1a.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T25C12.1a.1:c.*298_*904del | ||||
| cDNA_position | 2040-2646 | ||||
| Exon_number | 14/14 | ||||
| Genetics | Interpolated_map_position | X | 3.87852 | ||
| Mapping_data | In_2_point | 251 | |||
| In_pos_neg_data | 3918 | ||||
| 3920 | |||||
| Description (2) | |||||
| Reference | WBPaper00001467 | ||||
| WBPaper00038224 | |||||
| WBPaper00014165 | |||||
| WBPaper00016093 | |||||
| WBPaper00014557 | |||||
| WBPaper00001144 | |||||
| WBPaper00016468 | |||||
| WBPaper00016349 | |||||
| WBPaper00014201 | |||||
| Method | Deletion_allele |
