WormBase Tree Display for Variation: WBVar00090459
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| WBVar00090459 | Evidence | Paper_evidence | WBPaper00002751 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | n2398 | |||||
| Other_name | CE45243:p.Arg202Ter | ||||||
| C01G10.11a.1:c.604C>T | |||||||
| C01G10.11d.1:c.184C>T | |||||||
| CE39210:p.Arg202Ter | |||||||
| C01G10.11f.1:c.604C>T | |||||||
| C01G10.11c.1:c.331C>T | |||||||
| CE45251:p.Arg62Ter | |||||||
| CE39211:p.Arg202Ter | |||||||
| C01G10.11b.1:c.604C>T | |||||||
| CE45264:p.Arg111Ter | |||||||
| HGVSg | CHROMOSOME_V:g.15076969C>T | ||||||
| Sequence_details | SMap | S_parent | Sequence | C01G10 | |||
| Flanking_sequences | tgcgatttcactggctcaatgatgacggat | gaacgatggaatcagttgattcaatgtatt | |||||
| Mapping_target | C01G10 | ||||||
| Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00002751 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00027249 | ||||||
| Laboratory | MT | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00006808 | |||||
| WBGene00305285 | |||||||
| WBGene00305247 | |||||||
| Transcript | C01G10.11f.1 | VEP_consequence | stop_gained | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | C01G10.11f.1:c.604C>T | ||||||
| HGVSp | CE45243:p.Arg202Ter | ||||||
| cDNA_position | 728 | ||||||
| CDS_position | 604 | ||||||
| Protein_position | 202 | ||||||
| Exon_number | 7/12 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| C01G10.11d.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | C01G10.11d.1:c.184C>T | ||||||
| HGVSp | CE45251:p.Arg62Ter | ||||||
| cDNA_position | 184 | ||||||
| CDS_position | 184 | ||||||
| Protein_position | 62 | ||||||
| Exon_number | 2/5 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| C01G10.11b.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | C01G10.11b.1:c.604C>T | ||||||
| HGVSp | CE39211:p.Arg202Ter | ||||||
| cDNA_position | 615 | ||||||
| CDS_position | 604 | ||||||
| Protein_position | 202 | ||||||
| Exon_number | 7/10 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| C01G10.11a.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | C01G10.11a.1:c.604C>T | ||||||
| HGVSp | CE39210:p.Arg202Ter | ||||||
| cDNA_position | 612 | ||||||
| CDS_position | 604 | ||||||
| Protein_position | 202 | ||||||
| Exon_number | 7/11 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| C25D7.19 | |||||||
| C01G10.20 | |||||||
| C01G10.11c.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | C01G10.11c.1:c.331C>T | ||||||
| HGVSp | CE45264:p.Arg111Ter | ||||||
| cDNA_position | 331 | ||||||
| CDS_position | 331 | ||||||
| Protein_position | 111 | ||||||
| Exon_number | 4/7 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| Genetics | Interpolated_map_position | V | 7.32235 | ||||
| Reference | WBPaper00002751 | ||||||
| Method | Substitution_allele |
