WormBase Tree Display for Variation: WBVar00090634
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WBVar00090634 | Evidence | Paper_evidence | WBPaper00004635 | ||
---|---|---|---|---|---|
Name | Public_name | n2994 | |||
Other_name | T23G7.1.1:c.681-1G>A | ||||
T23G7.2a.1:c.244-1430C>T | |||||
T23G7.1.2:c.681-1G>A | |||||
HGVSg | CHROMOSOME_II:g.9170822G>A | ||||
Sequence_details (5) | |||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00027348 | ||||
Laboratory | MT | ||||
Status | Live | ||||
Affects | Gene | WBGene00011965 | |||
WBGene00001061 | |||||
Transcript | T23G7.2a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | T23G7.2a.1:c.244-1430C>T | ||||
Intron_number | 3/9 | ||||
T23G7.1.1 | VEP_consequence | splice_acceptor_variant | |||
VEP_impact | HIGH | ||||
HGVSc | T23G7.1.1:c.681-1G>A | ||||
Intron_number | 5/12 | ||||
T23G7.1.2 | VEP_consequence | splice_acceptor_variant | |||
VEP_impact | HIGH | ||||
HGVSc | T23G7.1.2:c.681-1G>A | ||||
Intron_number | 5/12 | ||||
Interactor | WBInteraction000503607 | ||||
WBInteraction000503609 | |||||
WBInteraction000503614 | |||||
WBInteraction000503615 | |||||
WBInteraction000503616 | |||||
WBInteraction000503617 | |||||
WBInteraction000503618 | |||||
WBInteraction000503621 | |||||
Genetics | Interpolated_map_position | II | 1.08085 | ||
Reference | WBPaper00004635 | ||||
Remark | Originally curated incorrectly to this location tataatagtctcaaatatctatttttaagaGcaaatgtggaatgcagtgtatcatcagaca Corrected based on pers comm from Arturo Bujarrabal who prvided the resequencing data. | Person_evidence | WBPerson37422 | ||
Curator_confirmed | WBPerson1983 | ||||
Manually curated Gene associations preserved as a text remark so that VEP is the canonical predictor of consequence: WBGene00001061 Acceptor | |||||
Method | Substitution_allele |