WormBase Tree Display for Variation: WBVar00090789
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WBVar00090789 | Evidence | Paper_evidence | WBPaper00031335 | ||||
---|---|---|---|---|---|---|---|
Name | Public_name | n4099 | |||||
Other_name | CE29914:p.Ser2239IlefsTer18 | ||||||
Y71G12B.11d.1:c.3589_4285del | |||||||
Y71G12B.11b.1:c.*4020_*4716del | |||||||
Y71G12B.11e.1:c.5620_6316del | |||||||
Y71G12B.11a.1:c.6715_7411del | |||||||
CE50474:p.Ser1874IlefsTer18 | |||||||
CE46470:p.Ser1576IlefsTer18 | |||||||
Y71G12B.11c.1:c.4726_5422del | |||||||
CE49571:p.Ser1197IlefsTer18 | |||||||
HGVSg | CHROMOSOME_I:g.1738180_1739175del | ||||||
Sequence_details | SMap | S_parent | Sequence | Y71G12B | |||
Flanking_sequences | GCCGTGAGGTCCCTGCTCGCCGTGGTGCGAACCATC | ATCGGAGATTGCAGGCTG | |||||
Mapping_target | Y71G12B | ||||||
Type_of_mutation | Deletion | ||||||
SeqStatus | Sequenced | ||||||
Variation_type | Allele | ||||||
Origin | Species | Caenorhabditis elegans | |||||
Laboratory | MT | ||||||
Status | Live | ||||||
Affects | Gene | WBGene00006771 | |||||
WBGene00003278 | |||||||
WBGene00199017 | |||||||
Transcript | Y71G12B.36 | VEP_consequence | transcript_ablation | ||||
VEP_impact | HIGH | ||||||
Exon_number | 1/1 | ||||||
Y71G12B.11c.1 (11) | |||||||
Y71G12B.29 | |||||||
Y71G12B.11e.1 (11) | |||||||
Y71G12B.11a.1 (11) | |||||||
Y71G12B.11d.1 (11) | |||||||
Y71G12B.11b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,3_prime_UTR_variant,intron_variant | |||||
VEP_impact | HIGH | ||||||
HGVSc | Y71G12B.11b.1:c.*4020_*4716del | ||||||
cDNA_position | 7018-7714 | ||||||
Intron_number | 11/12 | ||||||
Exon_number | 11-12/13 | ||||||
Isolation | Mutagen | UV-TMP | Paper_evidence | WBPaper00031335 | |||
Genetics | Interpolated_map_position | I | -13.1255 | ||||
Description | Phenotype | WBPhenotype:0000062 | Paper_evidence | WBPaper00031335 | |||
Curator_confirmed | WBPerson2021 | ||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | ||||
Curator_confirmed | WBPerson2021 | ||||||
Reference | WBPaper00031335 | ||||||
Method | Deletion_allele |