WormBase Tree Display for Variation: WBVar00090839

WBVar00090839 Evidence: Paper_evidence: WBPaper00031335
  Name: Public_name: n4438
    Other_name: E01F3.1e.1:c.704+1618_705-2094del
      E01F3.1h.1:c.392+1618_393-2094del
      E01F3.1c.1:c.392+1618_393-2094del
      E01F3.1i.1:c.704+1618_705-2094del
      E01F3.1b.1:c.545+1618_546-2094del
      E01F3.1f.1:c.404+1618_405-2094del
      E01F3.1j.1:c.545+1618_546-2094del
      E01F3.1g.1:c.404+1618_405-2094del
    HGVSg: CHROMOSOME_II:g.14946935_14947697del
  Sequence_details: SMap: S_parent: Sequence: E01F3
    Flanking_sequences: TGGTACTGGCCCCACTTTGATAGT AAAAATTTGTACATCTCTGCTC
    Mapping_target: E01F3
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00027453
    Laboratory: MT
    Status: Live
  Affects: Gene: WBGene00003366
      WBGene00008443
    Transcript: E01F3.2
      E01F3.1f.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: E01F3.1f.1:c.404+1618_405-2094del
        Intron_number: 3/10
      E01F3.1h.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: E01F3.1h.1:c.392+1618_393-2094del
        Intron_number: 3/11
      E01F3.1j.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: E01F3.1j.1:c.545+1618_546-2094del
        Intron_number: 4/11
      E01F3.1g.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: E01F3.1g.1:c.404+1618_405-2094del
        Intron_number: 4/12
      E01F3.1i.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: E01F3.1i.1:c.704+1618_705-2094del
        Intron_number: 5/12
      E01F3.1b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: E01F3.1b.1:c.545+1618_546-2094del
        Intron_number: 6/14
      E01F3.1c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: E01F3.1c.1:c.392+1618_393-2094del
        Intron_number: 3/11
      E01F3.1e.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: E01F3.1e.1:c.704+1618_705-2094del
        Intron_number: 5/12
  Isolation: Mutagen: UV-TMP Paper_evidence: WBPaper00031335
  Genetics: Interpolated_map_position: II 23.7727
  Description: Phenotype_not_observed: WBPhenotype:0000006 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: non-Egl Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000207 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: Defecation cycle is normal Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000306 Paper_evidence: WBPaper00035558
        Curator_confirmed: WBPerson48775
        Remark: quoted from paper: Paper_evidence: WBPaper00035558
            Curator_confirmed: WBPerson48775
        Variation_effect: Null: Paper_evidence: WBPaper00035558
            Curator_confirmed: WBPerson48775
        Phenotype_assay: Genotype: otIs220 [Pgcy-5::GFP] and [Pgcy-7::GFP] Paper_evidence: WBPaper00035558
              Curator_confirmed: WBPerson48775
      WBPhenotype:0000634 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: Pumping is normal Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000637 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: No defects in dauer formation Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000643 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: non-Unc Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0001233 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: Cell number and nuclear staining is normal Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: DAPI staining Paper_evidence: WBPaper00031335
              Curator_confirmed: WBPerson2021
      WBPhenotype:0001660 Paper_evidence: WBPaper00035558
        Curator_confirmed: WBPerson48775
        Remark: quoted from paper: Paper_evidence: WBPaper00035558
            Curator_confirmed: WBPerson48775
        Variation_effect: Null: Paper_evidence: WBPaper00035558
            Curator_confirmed: WBPerson48775
        Phenotype_assay: Genotype: otIs220 [Pgcy-5::GFP] and [Pgcy-7::GFP] Paper_evidence: WBPaper00035558
              Curator_confirmed: WBPerson48775
      WBPhenotype:0002535 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: non-Dyf Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        EQ_annotations: Anatomy_term: WBbt:0005666 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005667 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005668 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005665 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005661 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0007807 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0007808 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: DiO staining Paper_evidence: WBPaper00031335
              Curator_confirmed: WBPerson2021
  Reference: WBPaper00031335
    WBPaper00035558
  Method: Deletion_allele