WormBase Tree Display for Variation: WBVar00090929

WBVar00090929 Evidence: Paper_evidence: WBPaper00003907
  Name: Public_name: nc6
    Other_name: H30A04.1a.2:c.390_612+177del
      H30A04.1a.1:c.390_612+177del
      H30A04.1b.1:c.390_612+177del
    HGVSg: CHROMOSOME_X:g.15517514_15518589del
  Sequence_details: SMap: S_parent: Sequence: H30A04
    Flanking_sequences: gtttgatcgtactcaaaatccacgcacttt aatgagcaaaaagctatgaactttcggatt
    Mapping_target: H30A04
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: ST
    Status: Live
  Affects: Gene: WBGene00197018
      WBGene00001148
    Transcript: H30A04.2 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      H30A04.1a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: H30A04.1a.2:c.390_612+177del
        cDNA_position: 542-?
        CDS_position: 390-?
        Protein_position: 130-?
        Intron_number: 6-8/16
        Exon_number: 6-8/17
      H30A04.1b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: H30A04.1b.1:c.390_612+177del
        cDNA_position: 494-?
        CDS_position: 390-?
        Protein_position: 130-?
        Intron_number: 5-7/15
        Exon_number: 5-7/16
      H30A04.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: H30A04.1a.1:c.390_612+177del
        cDNA_position: 492-?
        CDS_position: 390-?
        Protein_position: 130-?
        Intron_number: 5-7/15
        Exon_number: 5-7/16
  Genetics: Interpolated_map_position: X 22.811
  Description: Phenotype: WBPhenotype:0000019 Paper_evidence: WBPaper00003907
        Curator_confirmed: WBPerson712
        Remark: Pumping rates were reduced about 15% from that observed for wild-type worms. Paper_evidence: WBPaper00003907
            Curator_confirmed: WBPerson712
      WBPhenotype:0000154 Paper_evidence: WBPaper00003907
        Curator_confirmed: WBPerson712
      WBPhenotype:0000293 Paper_evidence: WBPaper00003907
        Curator_confirmed: WBPerson712
        Remark: Animals had pale intestines. Paper_evidence: WBPaper00003907
            Curator_confirmed: WBPerson712
      WBPhenotype:0000324 Paper_evidence: WBPaper00003907
        Curator_confirmed: WBPerson712
      WBPhenotype:0000335 Paper_evidence: WBPaper00003907
        Curator_confirmed: WBPerson712
      WBPhenotype:0000547 Paper_evidence: WBPaper00003907
        Curator_confirmed: WBPerson712
      WBPhenotype:0001063 Paper_evidence: WBPaper00003907
        Curator_confirmed: WBPerson712
        Remark: Animals exhibited extended egg-laying periods. Paper_evidence: WBPaper00003907
            Curator_confirmed: WBPerson712
    Phenotype_not_observed: WBPhenotype:0000145 Paper_evidence: WBPaper00003907
        Curator_confirmed: WBPerson712
        Remark: No abnormalities were observed for these mutants. Paper_evidence: WBPaper00003907
            Curator_confirmed: WBPerson712
      WBPhenotype:0000520 Paper_evidence: WBPaper00003907
        Curator_confirmed: WBPerson712
        Remark: Animals showed no gross morphological defects. Paper_evidence: WBPaper00003907
            Curator_confirmed: WBPerson712
      WBPhenotype:0000604 Paper_evidence: WBPaper00003907
        Curator_confirmed: WBPerson712
        Remark: Animals showed no gross morphological defects. Paper_evidence: WBPaper00003907
            Curator_confirmed: WBPerson712
      WBPhenotype:0000618 Paper_evidence: WBPaper00003907
        Curator_confirmed: WBPerson712
        Remark: Coelomocytes were positioned correctly in comparison to control animals, further, coelomocytes retained DiI uptake ability. Paper_evidence: WBPaper00003907
            Curator_confirmed: WBPerson712
      WBPhenotype:0000643 Paper_evidence: WBPaper00003907
        Curator_confirmed: WBPerson712
        Remark: No abnormalities were observed for these mutants. Paper_evidence: WBPaper00003907
            Curator_confirmed: WBPerson712
      WBPhenotype:0000650 Paper_evidence: WBPaper00003907
        Curator_confirmed: WBPerson712
        Remark: No abnormalities were observed for these mutants. Paper_evidence: WBPaper00003907
            Curator_confirmed: WBPerson712
      WBPhenotype:0000709 Paper_evidence: WBPaper00003907
        Curator_confirmed: WBPerson712
        Remark: Animals showed no gross morphological defects. Paper_evidence: WBPaper00003907
            Curator_confirmed: WBPerson712
  Reference: WBPaper00003907
  Method: Deletion_allele