WormBase Tree Display for Variation: WBVar00091583
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| WBVar00091583 | Name | Public_name | ok285 | ||
|---|---|---|---|---|---|
| Other_name | M01A10.2h.1:c.1526_2008-24del | ||||
| M01A10.2g.1:c.1526_2008-24del | |||||
| M01A10.2f.1:c.1526_2007+115del | |||||
| M01A10.2e.1:c.1526_2007+115del | |||||
| M01A10.2a.1:c.1526_2007+115del | |||||
| M01A10.2i.1:c.1526_2008-24del | |||||
| HGVSg | CHROMOSOME_I:g.5551277_5552856del | ||||
| Sequence_details | SMap | S_parent | Sequence | M01A10 | |
| Flanking_sequences | aagtaacacttttccggtttacgaaacaag | tgtctgtgattcgtgtatttcagatcgacg | |||
| Mapping_target | M01A10 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | OK285_external | ||||
| OK285_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00035595 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006594 | |||
| WBGene00197900 | |||||
| Transcript | M01A10.2g.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | M01A10.2g.1:c.1526_2008-24del | ||||
| cDNA_position | 1633-? | ||||
| CDS_position | 1526-? | ||||
| Protein_position | 509-? | ||||
| Intron_number | 11-14/25 | ||||
| Exon_number | 11-14/26 | ||||
| M01A10.2f.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | M01A10.2f.1:c.1526_2007+115del | ||||
| cDNA_position | 1635-? | ||||
| CDS_position | 1526-? | ||||
| Protein_position | 509-? | ||||
| Intron_number | 11-14/25 | ||||
| Exon_number | 11-14/26 | ||||
| M01A10.7 | VEP_consequence | transcript_ablation | |||
| VEP_impact | HIGH | ||||
| Exon_number | 1/1 | ||||
| M01A10.2i.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | M01A10.2i.1:c.1526_2008-24del | ||||
| cDNA_position | 1526-? | ||||
| CDS_position | 1526-? | ||||
| Protein_position | 509-? | ||||
| Intron_number | 10-13/23 | ||||
| Exon_number | 10-13/24 | ||||
| M01A10.2h.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | M01A10.2h.1:c.1526_2008-24del | ||||
| cDNA_position | 1633-? | ||||
| CDS_position | 1526-? | ||||
| Protein_position | 509-? | ||||
| Intron_number | 11-14/24 | ||||
| Exon_number | 11-14/25 | ||||
| M01A10.2e.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | M01A10.2e.1:c.1526_2007+115del | ||||
| cDNA_position | 1632-? | ||||
| CDS_position | 1526-? | ||||
| Protein_position | 509-? | ||||
| Intron_number | 11-14/25 | ||||
| Exon_number | 11-14/26 | ||||
| M01A10.2a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | M01A10.2a.1:c.1526_2007+115del | ||||
| cDNA_position | 1633-? | ||||
| CDS_position | 1526-? | ||||
| Protein_position | 509-? | ||||
| Intron_number | 11-14/24 | ||||
| Exon_number | 11-14/25 | ||||
| Isolation | Mutagen | UV/TMP | |||
| Description | Phenotype (19) | ||||
| Reference | WBPaper00043908 | ||||
| WBPaper00023968 | |||||
| WBPaper00036766 | |||||
| WBPaper00026383 | |||||
| WBPaper00025744 | |||||
| WBPaper00024146 | |||||
| WBPaper00064917 | |||||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
