WormBase Tree Display for Variation: WBVar00091588
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| WBVar00091588 | Evidence | Paper_evidence | WBPaper00005609 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Name | Public_name | ok290 | |||||||
| Other_name | F55A8.1a.2:c.657+114_894+54del | ||||||||
| F55A8.1a.1:c.657+114_894+54del | |||||||||
| F55A8.1b.1:c.657+114_903+54del | |||||||||
| HGVSg | CHROMOSOME_IV:g.1914287_1914984del | ||||||||
| Sequence_details | SMap | S_parent | Sequence | F55A8 | |||||
| Flanking_sequences | cttttgaaaatctaccgctgcgcgattttt | agcagcagtaacagcttctaatggggggaa | |||||||
| Mapping_target | F55A8 | ||||||||
| Type_of_mutation | Deletion | ||||||||
| PCR_product | ok290_external | ||||||||
| ok290_internal | |||||||||
| SeqStatus | Sequenced | ||||||||
| Variation_type | Allele | ||||||||
| Origin | Species | Caenorhabditis elegans | |||||||
| Strain | WBStrain00022760 | ||||||||
| Laboratory | RB | ||||||||
| Person | WBPerson46 | ||||||||
| KO_consortium_allele | |||||||||
| Status | Live | ||||||||
| Affects | Gene | WBGene00305452 | |||||||
| WBGene00001186 | |||||||||
| Transcript | F55A8.1b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
| VEP_impact | HIGH | ||||||||
| HGVSc | F55A8.1b.1:c.657+114_903+54del | ||||||||
| Intron_number | 3-4/5 | ||||||||
| Exon_number | 4/6 | ||||||||
| F55A8.7 | |||||||||
| F55A8.1a.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
| VEP_impact | HIGH | ||||||||
| HGVSc | F55A8.1a.2:c.657+114_894+54del | ||||||||
| Intron_number | 4-5/6 | ||||||||
| Exon_number | 5/7 | ||||||||
| F55A8.1a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
| VEP_impact | HIGH | ||||||||
| HGVSc | F55A8.1a.1:c.657+114_894+54del | ||||||||
| Intron_number | 3-4/5 | ||||||||
| Exon_number | 4/6 | ||||||||
| Interactor | WBInteraction000501042 | ||||||||
| WBInteraction000524211 | |||||||||
| WBInteraction000524218 | |||||||||
| WBInteraction000541111 | |||||||||
| Description | Phenotype (20) | ||||||||
| Phenotype_not_observed | WBPhenotype:0002173 | Paper_evidence | WBPaper00042342 | ||||||
| Curator_confirmed | WBPerson557 | ||||||||
| Remark | Seam cell number is normal. | Paper_evidence | WBPaper00042342 | ||||||
| Curator_confirmed | WBPerson557 | ||||||||
| Hypodermal cell number normal. | Paper_evidence | WBPaper00042342 | |||||||
| Curator_confirmed | WBPerson557 | ||||||||
| EQ_annotations | Anatomy_term | WBbt:0005753 | PATO:0000460 | Paper_evidence | WBPaper00042342 | ||||
| Curator_confirmed | WBPerson557 | ||||||||
| WBbt:0007846 | PATO:0000460 | Paper_evidence | WBPaper00042342 | ||||||
| Curator_confirmed | WBPerson557 | ||||||||
| Reference | WBPaper00043908 | ||||||||
| WBPaper00005609 | |||||||||
| WBPaper00042342 | |||||||||
| WBPaper00053860 | |||||||||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||||||
| Method | KO_consortium_allele |
