WormBase Tree Display for Variation: WBVar00091879
expand all nodes | collapse all nodes | view schema
| WBVar00091879 | Evidence | Paper_evidence | WBPaper00061133 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Name | Public_name | ok593 | |||||||
| Other_name | F59A6.1b.1:c.1775_3614del | ||||||||
| CE50862:p.Tyr592PhefsTer2 | |||||||||
| F59A6.1a.1:c.1817_3665del | |||||||||
| CE44901:p.Tyr606PhefsTer2 | |||||||||
| HGVSg | CHROMOSOME_II:g.5026218_5028489del | ||||||||
| Sequence_details | SMap | S_parent | Sequence | F33G12 | |||||
| Flanking_sequences | cgaaacgagatgatcgtcaattattccttt | atcacttcagccgttcaatgtgccatttca | |||||||
| Mapping_target | F33G12 | ||||||||
| Type_of_mutation | Insertion | TCTA | |||||||
| Deletion | |||||||||
| PCR_product | ok593_external | ||||||||
| ok593_internal | |||||||||
| SeqStatus | Sequenced | ||||||||
| Variation_type | Allele | ||||||||
| Origin | Species | Caenorhabditis elegans | |||||||
| Strain | WBStrain00035731 | ||||||||
| WBStrain00040557 | |||||||||
| WBStrain00040566 | |||||||||
| WBStrain00040567 | |||||||||
| WBStrain00047207 | |||||||||
| WBStrain00047850 | |||||||||
| WBStrain00048364 | |||||||||
| WBStrain00048366 | |||||||||
| WBStrain00052473 | |||||||||
| Laboratory | RB | ||||||||
| Person | WBPerson46 | ||||||||
| KO_consortium_allele | |||||||||
| Status | Live | ||||||||
| Affects | Gene | WBGene00003822 | |||||||
| Transcript | F59A6.1a.1 (11) | ||||||||
| F59A6.1b.1 (11) | |||||||||
| Interactor | WBInteraction000519630 | ||||||||
| WBInteraction000519634 | |||||||||
| WBInteraction000537518 | |||||||||
| Isolation | Mutagen | TMP/UV | |||||||
| Description | Phenotype (12) | ||||||||
| Phenotype_not_observed | WBPhenotype:0002423 | Paper_evidence | WBPaper00049307 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Remark | "Multiple MAP kinase pathways were not required for Neuro-Nmnat1(gcIs30[Neuro-m-nonN-Nmnat1]) hypoxic survival." (Figure S3c) | Paper_evidence | WBPaper00049307 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| EQ_annotations | GO_term | GO:0001666 | PATO:0000460 | Paper_evidence | WBPaper00049307 | ||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Phenotype_assay | Genotype | gcIs30 [Neuro-m-nonN-Nmnat1] | Paper_evidence | WBPaper00049307 | |||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Reference (11) | |||||||||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||||||
| Method | KO_consortium_allele |
