WormBase Tree Display for Variation: WBVar00091897
expand all nodes | collapse all nodes | view schema
WBVar00091897 | Name | Public_name | ok613 | ||
---|---|---|---|---|---|
Other_name | B0564.10b.1:c.370-52_839+176del | ||||
B0564.10a.1:c.370-52_827+176del | |||||
HGVSg | CHROMOSOME_IV:g.13121075_13122567del | ||||
Sequence_details | SMap | S_parent | Sequence | B0564 | |
Flanking_sequences | gcaagtcactatgaaagtaggtaggcaggt | TCTGAAAATCTTTGAAATGCTCGATAAAGT | |||
Mapping_target | B0564 | ||||
Type_of_mutation | Deletion | ||||
PCR_product | OK613_external | ||||
OK613_internal | |||||
SeqStatus | Sequenced | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00022465 | ||||
WBStrain00035656 | |||||
Laboratory | RB | ||||
Person | WBPerson46 | ||||
KO_consortium_allele | |||||
Status | Live | ||||
Affects | Gene | WBGene00006766 | |||
Transcript | B0564.10b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||
VEP_impact | HIGH | ||||
HGVSc | B0564.10b.1:c.370-52_839+176del | ||||
Intron_number | 4-8/9 | ||||
Exon_number | 5-8/10 | ||||
B0564.10d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
VEP_impact | HIGH | ||||
Intron_number | 1-4/4 | ||||
Exon_number | 1-4/5 | ||||
B0564.10c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
VEP_impact | HIGH | ||||
Intron_number | 1-4/4 | ||||
Exon_number | 1-4/5 | ||||
B0564.10a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | B0564.10a.1:c.370-52_827+176del | ||||
Intron_number | 4-8/9 | ||||
Exon_number | 5-8/10 | ||||
Interactor | WBInteraction000525161 | ||||
Isolation | Mutagen | UV/TMP | |||
Description | Phenotype (6) | ||||
Reference | WBPaper00046510 | ||||
WBPaper00061439 | |||||
Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
Method | KO_consortium_allele |