WormBase Tree Display for Variation: WBVar00092004
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| WBVar00092004 | Evidence | Paper_evidence | WBPaper00032446 | ||
|---|---|---|---|---|---|
| Name | Public_name | ok722 | |||
| HGVSg | |||||
| Sequence_details | SMap | S_parent | Sequence | ZK783 | |
| Flanking_sequences | atgtaactcaagttcctgcctcgccagccg | aacctccaattttctcttcagatttccttt | |||
| Mapping_target | ZK783 | ||||
| Type_of_mutation | Insertion | AACATGTACAGTTGTACATTTTCTCTTTTTTAATTTATTTATCAATACCCCATCACATTTCTTTCCGTGACNGATTTCTCATGCTTTGATCTGATTATTTATTGCAANCTTGAAGAA | |||
| Deletion | |||||
| PCR_product | ok722_external | ||||
| ok722_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00031588 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00044448 | |||
| WBGene00001470 | |||||
| Transcript | ZK783.4.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| cDNA_position | 3829-? | ||||
| CDS_position | 3802-? | ||||
| Protein_position | 1268-? | ||||
| Intron_number | 8/9 | ||||
| Exon_number | 8-10/10 | ||||
| Pseudogene | ZK783.6 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,non_coding_transcript_exon_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| cDNA_position | 871-? | ||||
| Intron_number | 3/3 | ||||
| Exon_number | 3-4/4 | ||||
| Isolation | Mutagen | UV/TMP | |||
| Genetics | Mapping_data | In_multi_point | 4789 | ||
| Description | Phenotype_not_observed | WBPhenotype:0001652 | Paper_evidence | WBPaper00032446 | |
| Curator_confirmed | WBPerson2021 | ||||
| Reference | WBPaper00032446 | ||||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
