WormBase Tree Display for Variation: WBVar00092291

WBVar00092291 Name: Public_name: ok1021
    Other_name: CE30881:p.Glu93ArgfsTer4
      C26D10.5b.1:c.277_1532del
      CE03028:p.Glu93ArgfsTer4
      C26D10.5a.1:c.277_1532del
    HGVSg: CHROMOSOME_II:g.8347098_8348601del
  Sequence_details: SMap: S_parent: Sequence: C26D10
    Flanking_sequences: caactcgcatcccaagagatcaatgatgat cgatcttgttgagggaaaatggcacgaaat
    Mapping_target: C26D10
    Type_of_mutation: Deletion
    PCR_product: ok1021_external
      ok1021_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00003879
      WBStrain00003886
      WBStrain00036059
      WBStrain00040722
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00001159
    Transcript: C26D10.5a.1 (11)
      C26D10.5b.1 (11)
  Isolation: Mutagen: UV/TMP
  Description: Phenotype: WBPhenotype:0000702 Paper_evidence: WBPaper00031953
        Curator_confirmed: WBPerson712
        Remark: No hyp8-hyp11 cell fusion was observed in males, as assayed by the persistence into adulthood of cell boundaries (visualized by AJM::GFP). Paper_evidence: WBPaper00031953
            Curator_confirmed: WBPerson712
        EQ_annotations: Anatomy_term: WBbt:0004381 PATO:0000460 Paper_evidence: WBPaper00031953
                Curator_confirmed: WBPerson712
            WBbt:0004380 PATO:0000460 Paper_evidence: WBPaper00031953
                Curator_confirmed: WBPerson712
            WBbt:0004378 PATO:0000460 Paper_evidence: WBPaper00031953
                Curator_confirmed: WBPerson712
            WBbt:0004377 PATO:0000460 Paper_evidence: WBPaper00031953
                Curator_confirmed: WBPerson712
          Life_stage: WBls:0000073 PATO:0000460 Paper_evidence: WBPaper00031953
                Curator_confirmed: WBPerson712
        Phenotype_assay: Genotype: syIs78[AJM-1::GFP, unc-119(+)] Paper_evidence: WBPaper00031953
              Curator_confirmed: WBPerson712
      WBPhenotype:0002365 Paper_evidence: WBPaper00046306
        Curator_confirmed: WBPerson9270
        Remark: Table S1 Paper_evidence: WBPaper00046306
            Curator_confirmed: WBPerson9270
    Phenotype_not_observed: WBPhenotype:0000070 Paper_evidence: WBPaper00031953
        Curator_confirmed: WBPerson712
        Remark: Tail retraction proceeded with only subtle abnormalities resulting in a blunt-ended tail. Paper_evidence: WBPaper00031953
            Curator_confirmed: WBPerson712
        EQ_annotations: Life_stage: WBls:0000056 PATO:0000460 Paper_evidence: WBPaper00031953
                Curator_confirmed: WBPerson712
        Phenotype_assay: Genotype: syIs78[AJM-1::GFP, unc-119(+)] Paper_evidence: WBPaper00031953
              Curator_confirmed: WBPerson712
      WBPhenotype:0000702 Paper_evidence: WBPaper00029363
        Curator_confirmed: WBPerson2021
        Remark: Does not affect cell fusion in the anchor cell, specific vulval and late seam cells Paper_evidence: WBPaper00029363
            Curator_confirmed: WBPerson2021
        Variation_effect: Null: Paper_evidence: WBPaper00029363
            Curator_confirmed: WBPerson2021
        EQ_annotations: Life_stage: WBls:0000038 PATO:0000460 Paper_evidence: WBPaper00029363
                Curator_confirmed: WBPerson2021
      WBPhenotype:0001431 Paper_evidence: WBPaper00031953
        Curator_confirmed: WBPerson712
        Remark: Tail retraction proceeded with only subtle abnormalities. Paper_evidence: WBPaper00031953
            Curator_confirmed: WBPerson712
        EQ_annotations: Life_stage: WBls:0000073 PATO:0000460 Paper_evidence: WBPaper00031953
                Curator_confirmed: WBPerson712
        Phenotype_assay: Genotype: syIs78[AJM-1::GFP, unc-119(+)] Paper_evidence: WBPaper00031953
              Curator_confirmed: WBPerson712
      WBPhenotype:0001911 Paper_evidence: WBPaper00046306
        Curator_confirmed: WBPerson9270
        Remark: Table S2 Paper_evidence: WBPaper00046306
            Curator_confirmed: WBPerson9270
      WBPhenotype:0002478 Paper_evidence: WBPaper00053323
        Curator_confirmed: WBPerson9270
        Remark: Figure 5, level of phosphatidylserine exposed on the PLM axon after axotomy unchanged compared to wild type Paper_evidence: WBPaper00053323
            Curator_confirmed: WBPerson9270
        EQ_annotations: Anatomy_term: WBbt:0005490 PATO:0000460 Paper_evidence: WBPaper00053323
                Curator_confirmed: WBPerson9270
          GO_term: GO:0030424 PATO:0000460 Paper_evidence: WBPaper00053323
                Curator_confirmed: WBPerson9270
          Molecule_affected: WBMol:00003183 PATO:0000460 Paper_evidence: WBPaper00053323
                Curator_confirmed: WBPerson9270
  Reference: WBPaper00031953
    WBPaper00029363
    WBPaper00046306
    WBPaper00053323
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele