WormBase Tree Display for Variation: WBVar00092312

WBVar00092312 Name: Public_name: ok1042
    Other_name: W04C9.1a.1:c.635_1725+8del
      W04C9.1b.1:c.437_1527+8del
    HGVSg: CHROMOSOME_I:g.491887_493564del
  Sequence_details: SMap: S_parent: Sequence: W04C9
    Flanking_sequences: acacgggacaagtcatcgctaccgtggtcg gcgtcaatttcggttcgacaaatcgtttgc
    Mapping_target: W04C9
    Type_of_mutation: Deletion
    PCR_product: OK1042_external
      OK1042_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00031784
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00001814
    Transcript: W04C9.1b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: W04C9.1b.1:c.437_1527+8del
        cDNA_position: 437-?
        CDS_position: 437-?
        Protein_position: 146-?
        Intron_number: 4-6/8
        Exon_number: 4-6/9
      W04C9.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: W04C9.1a.1:c.635_1725+8del
        cDNA_position: 717-?
        CDS_position: 635-?
        Protein_position: 212-?
        Intron_number: 6-8/11
        Exon_number: 6-8/12
  Isolation: Mutagen: UV/TMP
  Description: Phenotype: WBPhenotype:0000031 Paper_evidence: WBPaper00033097
        Curator_confirmed: WBPerson10361
      WBPhenotype:0000154 Paper_evidence: WBPaper00033097
        Curator_confirmed: WBPerson10361
      WBPhenotype:0000208 Paper_evidence: WBPaper00033097
        Curator_confirmed: WBPerson10361
    Phenotype_not_observed: WBPhenotype:0000634 Paper_evidence: WBPaper00033097
        Curator_confirmed: WBPerson10361
      WBPhenotype:0001208 Paper_evidence: WBPaper00027644
        Curator_confirmed: WBPerson557
        Remark: Animals were not resistant to RNAi as assayed on either pop-1 RNAi or unc-22 RNAi. Paper_evidence: WBPaper00027644
            Curator_confirmed: WBPerson557
        Phenotype_assay: Treatment: Animals reared on both pop-1 and unc-22 feeding plates at 15, 20, 25, and 26C. Paper_evidence: WBPaper00027644
              Curator_confirmed: WBPerson557
  Reference: WBPaper00027644
    WBPaper00033097
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele