WormBase Tree Display for Variation: WBVar00092747

WBVar00092747 Name: Public_name: ok1536
    HGVSg: CHROMOSOME_I:g.3605497_3607175del
  Sequence_details: SMap: S_parent: Sequence: Y47G6A
    Flanking_sequences: atttcttttttgaaaaaaaaacctttttca tgatacagaatccacgaagtttcggttttg
    Mapping_target: Y47G6A
    Type_of_mutation: Deletion
    PCR_product: ok1536_external
      ok1536_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00036348
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00271653
      WBGene00021648
      WBGene00021649
    Transcript: Y47G6A.39 VEP_consequence: non_coding_transcript_exon_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-54
        Exon_number: 1/2
      Y47G6A.25.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 1019-?
        CDS_position: 953-?
        Protein_position: 318-?
        Intron_number: 5-6/7
        Exon_number: 5-8/8
      Y47G6A.24b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-192
        CDS_position: ?-142
        Protein_position: ?-48
        Intron_number: 2/7
        Exon_number: 1-3/8
      Y47G6A.24a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-151
        CDS_position: ?-142
        Protein_position: ?-48
        Intron_number: 2/7
        Exon_number: 1-3/8
  Isolation: Mutagen: UV/TMP
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele