WormBase Tree Display for Variation: WBVar00093040
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| WBVar00093040 | Name | Public_name | ok1843 | ||
|---|---|---|---|---|---|
| Other_name | T22B2.4b.1:c.82+14_*31-278del | ||||
| T22B2.4a.1:c.82+14_441-278del | |||||
| T22B2.4b.2:c.82+14_*382del | |||||
| HGVSg | CHROMOSOME_X:g.3904734_3906536del | ||||
| Sequence_details | SMap | S_parent | Sequence | T22B2 | |
| Flanking_sequences | cgccgaaccagtagttggtgagtttcctgt | caatgattttacttttcattctatccaaat | |||
| Mapping_target | T22B2 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok1843_external | ||||
| ok1843_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00036719 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006321 | |||
| Transcript | T22B2.4b.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | T22B2.4b.2:c.82+14_*382del | ||||
| cDNA_position | ?-888 | ||||
| Intron_number | 2-5/7 | ||||
| Exon_number | 3-7/8 | ||||
| T22B2.4a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | T22B2.4a.1:c.82+14_441-278del | ||||
| Intron_number | 2-5/7 | ||||
| Exon_number | 3-5/8 | ||||
| T22B2.4b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | T22B2.4b.1:c.82+14_*31-278del | ||||
| Intron_number | 2-7/8 | ||||
| Exon_number | 3-7/9 | ||||
| Isolation | Mutagen | UV/TMP | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
