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WormBase Tree Display for Variation: WBVar00094074

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Name Class

WBVar00094074NamePublic_nameok2987
Other_nameK08F8.1b.1:c.242_929+15del
K08F8.1a.1:c.242_929+15del
K08F8.1d.1:c.242_929+15del
HGVSgCHROMOSOME_II:g.8745268_8746021del
Sequence_detailsSMapS_parentSequenceK08F8
Flanking_sequencestgctctttcagcgttcattggttctgaatgttttgtcttctagattctataaatcttatt
Mapping_targetK08F8
Type_of_mutationDeletion
PCR_productok2987_external
ok2987_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00032888
LaboratoryRB
PersonWBPerson46
KO_consortium_allele
StatusLive
AffectsGeneWBGene00010681
TranscriptK08F8.1c.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
VEP_impactHIGH
Intron_number1-2/5
Exon_number1-2/6
K08F8.1d.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScK08F8.1d.1:c.242_929+15del
cDNA_position300-?
CDS_position242-?
Protein_position81-?
Intron_number4-5/8
Exon_number4-5/9
K08F8.1e.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
VEP_impactHIGH
Intron_number1-2/3
Exon_number1-2/4
K08F8.1b.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScK08F8.1b.1:c.242_929+15del
cDNA_position300-?
CDS_position242-?
Protein_position81-?
Intron_number4-5/8
Exon_number4-5/9
K08F8.1a.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScK08F8.1a.1:c.242_929+15del
cDNA_position294-?
CDS_position242-?
Protein_position81-?
Intron_number4-5/9
Exon_number4-5/10
InteractorWBInteraction000525229
IsolationMutagenEMS
DescriptionPhenotypeWBPhenotype:0000273Paper_evidenceWBPaper00046636
Curator_confirmedWBPerson557
Remarkmak-1(ok2987) worms show slightly reduced motility.Paper_evidenceWBPaper00046636
Curator_confirmedWBPerson557
Variation_effectNullPaper_evidenceWBPaper00046636
Curator_confirmedWBPerson557
WBPhenotype:0001203Paper_evidenceWBPaper00046636
Curator_confirmedWBPerson557
Remarkmak-1 mutants are partially resistant to nicotine. The likely null allele, mak-1(ok2987), shows greater resistance than mak-1(tm3445).Paper_evidenceWBPaper00046636
Curator_confirmedWBPerson557
Variation_effectNullPaper_evidenceWBPaper00046636
Curator_confirmedWBPerson557
Phenotype_assayTreatmentAnimals exposed to a solution of 0.1 percent nicotine.Paper_evidenceWBPaper00046636
Curator_confirmedWBPerson557
Phenotype_not_observedWBPhenotype:0001408Paper_evidenceWBPaper00046636
Curator_confirmedWBPerson557
RemarkTo examine sarcomere morphology the authors looked at the localization of the following proteins: UNC-22, UNC-52, UNC-112, UNC-95, ATN-1, UNC-89 and MHC A. Antibodies to all these proteins showed normal localization in mak-1(ok2987) animals.Paper_evidenceWBPaper00046636
Curator_confirmedWBPerson557
Variation_effectNullPaper_evidenceWBPaper00046636
Curator_confirmedWBPerson557
WBPhenotype:0001889Paper_evidenceWBPaper00046636
Curator_confirmedWBPerson557
RemarkTo examine sarcomere morphology the authors looked at the localization of the following proteins: UNC-22, UNC-52, UNC-112, UNC-95, ATN-1, UNC-89 and MHC A. Antibodies to all these proteins showed normal localization in mak-1(ok2987) animals.Paper_evidenceWBPaper00046636
Curator_confirmedWBPerson557
Variation_effectNullPaper_evidenceWBPaper00046636
Curator_confirmedWBPerson557
ReferenceWBPaper00046636
RemarkSequenced by the C. elegans Gene Knockout ConsortiumPaper_evidenceWBPaper00041807
MethodKO_consortium_allele