WormBase Tree Display for Variation: WBVar00094670
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| WBVar00094670 | Name | Public_name | or57 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Sequence_details | SeqStatus | Pending_curation | |||||||
| Variation_type | Allele | ||||||||
| Origin | Species | Caenorhabditis elegans | |||||||
| Strain | WBStrain00007264 | ||||||||
| Laboratory | EU | ||||||||
| Status | Live | ||||||||
| Affects | Gene | WBGene00003397 | |||||||
| Interactor | WBInteraction000051371 | ||||||||
| WBInteraction000503434 | |||||||||
| WBInteraction000538703 | |||||||||
| WBInteraction000538716 | |||||||||
| WBInteraction000538724 | |||||||||
| Description | Phenotype | WBPhenotype:0000052 | Paper_evidence | WBPaper00002870 | |||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Penetrance | Complete | 100 percent | Paper_evidence | WBPaper00002870 | |||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Recessive | Paper_evidence | WBPaper00002870 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| EQ_annotations | Life_stage | WBls:0000003 | PATO:0000460 | Paper_evidence | WBPaper00002870 | ||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Maternal | |||||||||
| WBPhenotype:0000219 | Paper_evidence | WBPaper00031110 | |||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031110 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| WBPhenotype:0000232 | Paper_evidence | WBPaper00026706 | |||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Remark | Table 1; Figure 5 | Paper_evidence | WBPaper00026706 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Penetrance | Low | 6 | Paper_evidence | WBPaper00026706 | |||||
| Curator_confirmed | WBPerson2987 | ||||||||
| EQ_annotations | Anatomy_term | WBbt:0006827 | PATO:0000460 | Paper_evidence | WBPaper00026706 | ||||
| Curator_confirmed | WBPerson2987 | ||||||||
| GO_term | GO:0016477 | PATO:0000460 | Paper_evidence | WBPaper00026706 | |||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Phenotype_assay | Treatment | "A CAN was scored as anteriorly misplaced (Ant.) if its nucleus was anterior to the V3 nucleus and posteriorly misplaced (Post.) if posterior to the V4 nucleus." | Paper_evidence | WBPaper00026706 | |||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Genotype | dpy-5(e61) | Paper_evidence | WBPaper00026706 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| WBPhenotype:0000469 | Paper_evidence | WBPaper00026706 | |||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Remark | "Although ALM cell migration resembles wild type in mom-5 mutants, we found that several other cell migrations were disrupted." (Table 1) | Paper_evidence | WBPaper00026706 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Penetrance | Incomplete | 87 | Paper_evidence | WBPaper00026706 | |||||
| Curator_confirmed | WBPerson2987 | ||||||||
| EQ_annotations | Anatomy_term | WBbt:0004991 | PATO:0000460 | Paper_evidence | WBPaper00026706 | ||||
| Curator_confirmed | WBPerson2987 | ||||||||
| WBbt:0003832 | PATO:0000460 | Paper_evidence | WBPaper00026706 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| GO_term | GO:0016477 | PATO:0000460 | Paper_evidence | WBPaper00026706 | |||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Phenotype_assay | Treatment | "A QR cell descendant was scored as defective if its nucleus was posterior to the V2.a nucleus. Because they occupy positions near each other, the data for SDQR and AVM were combined. The position of AQR, a third QR descendant, was not included because it migrates to a location near other nuclei with similar morphology." | Paper_evidence | WBPaper00026706 | |||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Genotype | dpy-5(e61) | Paper_evidence | WBPaper00026706 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| WBPhenotype:0000470 | Paper_evidence | WBPaper00026706 | |||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Remark | "Although ALM cell migration resembles wild type in mom-5 mutants, we found that several other cell migrations were disrupted." (Table 1) | Paper_evidence | WBPaper00026706 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Penetrance | Incomplete | 13 | Paper_evidence | WBPaper00026706 | |||||
| Curator_confirmed | WBPerson2987 | ||||||||
| EQ_annotations | Anatomy_term | WBbt:0006830 | PATO:0000460 | Paper_evidence | WBPaper00026706 | ||||
| Curator_confirmed | WBPerson2987 | ||||||||
| GO_term | GO:0016477 | PATO:0000460 | Paper_evidence | WBPaper00026706 | |||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Phenotype_assay | Treatment | "An HSN was scored as defective if its nucleus was posterior to the V4 nucleus." | Paper_evidence | WBPaper00026706 | |||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Genotype | dpy-5(e61) | Paper_evidence | WBPaper00026706 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| WBPhenotype:0000594 | Paper_evidence | WBPaper00026706 | |||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Remark | "Although ALM cell migration resembles wild type in mom-5 mutants, we found that several other cell migrations were disrupted." (Table 1) | Paper_evidence | WBPaper00026706 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Penetrance | Low | 7 | Paper_evidence | WBPaper00026706 | |||||
| Curator_confirmed | WBPerson2987 | ||||||||
| EQ_annotations | Anatomy_term | WBbt:0006826 | PATO:0000460 | Paper_evidence | WBPaper00026706 | ||||
| Curator_confirmed | WBPerson2987 | ||||||||
| GO_term | GO:0016477 | PATO:0000460 | Paper_evidence | WBPaper00026706 | |||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Phenotype_assay | Treatment | "A BDU was scored as defective if its nucleus was posterior to the V1 nucleus." | Paper_evidence | WBPaper00026706 | |||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Genotype | dpy-5(e61) | Paper_evidence | WBPaper00026706 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| WBPhenotype:0000760 | Paper_evidence | WBPaper00002870 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Remark | ABar divides roughly parallel (instead of orthogonal) to the other AB descendants in mom mutants | Paper_evidence | WBPaper00002870 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Penetrance | Complete | 100 percent | Paper_evidence | WBPaper00002870 | |||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Recessive | Paper_evidence | WBPaper00002870 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| EQ_annotations | Anatomy_term | WBbt:0006411 | PATO:0000460 | Paper_evidence | WBPaper00002870 | ||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Life_stage | WBls:0000003 | PATO:0000460 | Paper_evidence | WBPaper00002870 | |||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Maternal | |||||||||
| WBPhenotype:0001635 | Paper_evidence | WBPaper00002870 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Remark | Mutant embryos make large amounts of pharynx | Paper_evidence | WBPaper00002870 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Recessive | Paper_evidence | WBPaper00002870 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| EQ_annotations | Life_stage | WBls:0000003 | PATO:0000460 | Paper_evidence | WBPaper00002870 | ||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Maternal | |||||||||
| Phenotype_assay | Treatment | staining with 9.2.1 antibody (stains pharyngeal-specific muscle cells) | Paper_evidence | WBPaper00002870 | |||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Temperature | 20C | Paper_evidence | WBPaper00002870 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBPhenotype:0001637 | Paper_evidence | WBPaper00002870 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Remark | Few mutant embryos entirely lack intestinal cells | Paper_evidence | WBPaper00002870 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Penetrance | Low | 5 percent | Paper_evidence | WBPaper00002870 | |||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Recessive | Paper_evidence | WBPaper00002870 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| EQ_annotations | Life_stage | WBls:0000003 | PATO:0000460 | Paper_evidence | WBPaper00002870 | ||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Maternal | |||||||||
| Phenotype_assay | Treatment | Intact embryos were examined by scoring intestinal birefringence | Paper_evidence | WBPaper00002870 | |||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Temperature | 20C | Paper_evidence | WBPaper00002870 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Phenotype_not_observed | WBPhenotype:0000469 | Paper_evidence | WBPaper00026706 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Remark | "Although ALM cell migration resembles wild type in mom-5 mutants, we found that several other cell migrations were disrupted." (Table 1) | Paper_evidence | WBPaper00026706 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| EQ_annotations | Anatomy_term | WBbt:0004993 | PATO:0000460 | Paper_evidence | WBPaper00026706 | ||||
| Curator_confirmed | WBPerson2987 | ||||||||
| WBbt:0004086 | PATO:0000460 | Paper_evidence | WBPaper00026706 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| GO_term | GO:0016477 | PATO:0000460 | Paper_evidence | WBPaper00026706 | |||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Phenotype_assay | Treatment | "A QL cell descendant was scored as misplaced anteriorly if its nucleus was anterior to V4.p. Because they occupy positions near each other, the data for SDQL and PVM were combined. The position of PQR, a third QL descendant, was not included because it migrates to a location near other nuclei with similar morphology." | Paper_evidence | WBPaper00026706 | |||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Genotype | dpy-5(e61) | Paper_evidence | WBPaper00026706 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| WBPhenotype:0000471 | Paper_evidence | WBPaper00026706 | |||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Remark | "Although ALM cell migration resembles wild type in mom-5 mutants, we found that several other cell migrations were disrupted." (Table 1) | Paper_evidence | WBPaper00026706 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| EQ_annotations | Anatomy_term | WBbt:0005406 | PATO:0000460 | Paper_evidence | WBPaper00026706 | ||||
| Curator_confirmed | WBPerson2987 | ||||||||
| GO_term | GO:0016477 | PATO:0000460 | Paper_evidence | WBPaper00026706 | |||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Phenotype_assay | Treatment | "An ALM was scored as anteriorly misplaced (Ant.) if its nucleus was anterior to the V2 nucleus and posteriorly misplaced (Post.) if posterior to the V3 nucleus." | Paper_evidence | WBPaper00026706 | |||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Genotype | dpy-5(e61) | Paper_evidence | WBPaper00026706 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| WBPhenotype:0001302 | Paper_evidence | WBPaper00002870 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Remark | P granule localization is normal | Paper_evidence | WBPaper00002870 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Recessive | Paper_evidence | WBPaper00002870 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| EQ_annotations | Life_stage | WBls:0000003 | PATO:0000460 | Paper_evidence | WBPaper00002870 | ||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Phenotype_assay | Treatment | staining with OIC1D4 monoclonal antibody (stains P granules) | Paper_evidence | WBPaper00002870 | |||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBPhenotype:0001652 | Paper_evidence | WBPaper00032446 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBPhenotype:0001968 | Paper_evidence | WBPaper00005116 | |||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Remark | Table 4 | Paper_evidence | WBPaper00005116 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Reference | WBPaper00031110 | ||||||||
| WBPaper00032446 | |||||||||
| WBPaper00026706 | |||||||||
| WBPaper00017087 | |||||||||
| WBPaper00002870 | |||||||||
| WBPaper00005116 | |||||||||
| Method | Allele |
