WormBase Tree Display for Variation: WBVar00094772
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WBVar00094772 | Evidence | Person_evidence | WBPerson260 | ||
---|---|---|---|---|---|
Name | Public_name | ot1 | |||
Other_name | K10B2.1d.1:c.1663C>T | ||||
CE28600:p.Pro610Ser | |||||
CE50404:p.Pro610Ser | |||||
K10B2.1b.1:c.1828C>T | |||||
K10B2.1c.1:c.1663C>T | |||||
K10B2.1a.1:c.1828C>T | |||||
CE50396:p.Pro555Ser | |||||
CE50346:p.Pro555Ser | |||||
HGVSg | CHROMOSOME_II:g.6373695C>T | ||||
Sequence_details | SMap | S_parent | Sequence | K10B2 | |
Flanking_sequences | gttaataatccgaacgtggctggaccagcg | caccgcaaccacacaatcagaatcatagaa | |||
Mapping_target | K10B2 | ||||
Type_of_mutation | Substitution | c | t | ||
SeqStatus | Sequenced | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00029321 | ||||
WBStrain00029324 | |||||
WBStrain00029329 | |||||
WBStrain00029333 | |||||
Laboratory | OH | ||||
Status | Live | ||||
Affects | Gene | WBGene00003009 | |||
Transcript | K10B2.1c.1 | VEP_consequence | missense_variant | ||
VEP_impact | MODERATE | ||||
HGVSc | K10B2.1c.1:c.1663C>T | ||||
HGVSp | CE50346:p.Pro555Ser | ||||
cDNA_position | 1663 | ||||
CDS_position | 1663 | ||||
Protein_position | 555 | ||||
Exon_number | 6/7 | ||||
Codon_change | Cca/Tca | ||||
Amino_acid_change | P/S | ||||
K10B2.1d.1 | VEP_consequence | missense_variant | |||
VEP_impact | MODERATE | ||||
HGVSc | K10B2.1d.1:c.1663C>T | ||||
HGVSp | CE50396:p.Pro555Ser | ||||
cDNA_position | 1663 | ||||
CDS_position | 1663 | ||||
Protein_position | 555 | ||||
Exon_number | 6/7 | ||||
Codon_change | Cca/Tca | ||||
Amino_acid_change | P/S | ||||
K10B2.1b.1 | VEP_consequence | missense_variant | |||
VEP_impact | MODERATE | ||||
HGVSc | K10B2.1b.1:c.1828C>T | ||||
HGVSp | CE50404:p.Pro610Ser | ||||
cDNA_position | 1838 | ||||
CDS_position | 1828 | ||||
Protein_position | 610 | ||||
Exon_number | 8/10 | ||||
Codon_change | Cca/Tca | ||||
Amino_acid_change | P/S | ||||
K10B2.1a.1 | VEP_consequence | missense_variant | |||
VEP_impact | MODERATE | ||||
HGVSc | K10B2.1a.1:c.1828C>T | ||||
HGVSp | CE28600:p.Pro610Ser | ||||
cDNA_position | 1836 | ||||
CDS_position | 1828 | ||||
Protein_position | 610 | ||||
Exon_number | 8/10 | ||||
Codon_change | Cca/Tca | ||||
Amino_acid_change | P/S | ||||
Interactor | WBInteraction000520064 | ||||
Isolation | Mutagen | EMS | |||
Genetics | Interpolated_map_position | II | -0.376159 | ||
Description (2) | |||||
Reference | WBPaper00018033 | ||||
WBPaper00025446 | |||||
WBPaper00016962 | |||||
Remark | Mehta, Loria and Hobert (2004), Genetics, in press | ||||
ot1 is a P(610) to S mutation | Person_evidence | WBPerson260 | |||
Method | Substitution_allele |