WormBase Tree Display for Variation: WBVar00104544
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| WBVar00104544 | Evidence | Paper_evidence | WBPaper00040707 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00104544 | |||
| Other_name | pas9403 | ||||
| cewivar00091311 | |||||
| C52E12.2a.2:c.1932G>T | |||||
| CE48050:p.Val644= | |||||
| C52E12.2a.1:c.1932G>T | |||||
| CE47855:p.Val644= | |||||
| C52E12.2b.1:c.1932G>T | |||||
| HGVSg | CHROMOSOME_II:g.7003950G>T | ||||
| Sequence_details | SMap | S_parent | Sequence | C52E12 | |
| Flanking_sequences | gcagcaatagctggttagttcagaaaaatcattttaatcaaaggtttaaaataattgtagaacaaccaattgattggaaatatgctcaacaagaacttctagacaaacaaggaattgatctaaaagcagatatggagaagaaaatgttagaaatggaatctcaatacagaagagaaaaagtagaattggaacaaaaaatgtatcatcagacaagggtaaacctacattcatttgtaaatatttaaaaaaataaatttcttaggaatatgaatcaatgattgaaaatcttcaaaaacaagt | gatttggcacaatcttatatatctggtggtggttctatttgggaaggagaacgaatgttgacgtcatctttacttgaattccgtaagtgctctttttttgaaaggcggcgattgttttcaaagatattacaatttattcatttttgaaaactgcttaacaccagtgaaactttttcatccattattgtttgaaatcacaagattatatttttcaaacagctctaatgtttcgtaagtttggcaatttgccaaactatttagatatatcccaactgacgctatttcgccttttaaaatgtt | |||
| Mapping_target | C52E12 | ||||
| Type_of_mutation | Substitution | G | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (29) | |||||
| Laboratory | QX | ||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01438339 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00006831 | |||
| Transcript | C52E12.2a.2 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | C52E12.2a.2:c.1932G>T | ||||
| HGVSp | CE48050:p.Val644= | ||||
| cDNA_position | 1934 | ||||
| CDS_position | 1932 | ||||
| Protein_position | 644 | ||||
| Exon_number | 11/24 | ||||
| Codon_change | gtG/gtT | ||||
| Amino_acid_change | V | ||||
| C52E12.2b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | C52E12.2b.1:c.1932G>T | ||||
| HGVSp | CE47855:p.Val644= | ||||
| cDNA_position | 2132 | ||||
| CDS_position | 1932 | ||||
| Protein_position | 644 | ||||
| Exon_number | 11/25 | ||||
| Codon_change | gtG/gtT | ||||
| Amino_acid_change | V | ||||
| C52E12.2a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | C52E12.2a.1:c.1932G>T | ||||
| HGVSp | CE48050:p.Val644= | ||||
| cDNA_position | 2068 | ||||
| CDS_position | 1932 | ||||
| Protein_position | 644 | ||||
| Exon_number | 11/24 | ||||
| Codon_change | gtG/gtT | ||||
| Amino_acid_change | V | ||||
| Reference | WBPaper00040707 | ||||
| Method | WGS_Pasadena_Quinlan |
