WormBase Tree Display for Variation: WBVar00104560
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| WBVar00104560 | Name | Public_name | WBVar00104560 | ||
|---|---|---|---|---|---|
| Other_name | pas9419 | ||||
| haw26267 | |||||
| haw131285 | |||||
| cewivar00091316 | |||||
| C52E12.2a.1:c.2345+779A>C | |||||
| C52E12.2a.2:c.2345+779A>C | |||||
| C52E12.2b.1:c.2346-407A>C | |||||
| HGVSg | CHROMOSOME_II:g.7005569A>C | ||||
| Sequence_details | SMap | S_parent | Sequence | C52E12 | |
| Flanking_sequences | gaaattttgtttccaaagtggttgcctataactcagttcccctcctacaatttttttaaagactgttctgaagtttttaaactaaaaacagagttttgaacttctcaacccttgaatatatatttttcaaaaattaagttttttttggaaaattaagtttttttttggattttggacgtttaaattttaaaaaaaattgaatttctcactaccagagtcaattttaaaaatatggtttttaatacatttttcaaacttttaaaatttttacatttttgcgaatacttatcgaagaatctc | aatggaaagttgttggtaattatccggcgtactaaaaattcccggttgtttaactttggcttgtcaacaacaagtttacaacgaattccaaaacaacttatatattcgtttattcataaatctagagagaaaaaataaataataaccggagagtaattggtgcgagggaataaaggaatttaaaatataaactaccttctagagtagttttcaaattgttttgatttttttttgcaaattcaaaacgagataatcgaatttagacaatggggtgtggcgcacgccccgtcgaacgtctaa | |||
| Mapping_target | C52E12 | ||||
| Type_of_mutation | Substitution | A | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (162) | |||||
| Laboratory | QX | ||||
| AX | |||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| WBPerson1730 | |||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar00173017 | |||
| WBVar01307358 | |||||
| WBVar01373018 | |||||
| WBVar00551150 | |||||
| WBVar01240980 | |||||
| WBVar01438343 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006831 | |||
| Transcript | C52E12.2a.2 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C52E12.2a.2:c.2345+779A>C | ||||
| Intron_number | 13/23 | ||||
| C52E12.2b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C52E12.2b.1:c.2346-407A>C | ||||
| Intron_number | 13/24 | ||||
| C52E12.2a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C52E12.2a.1:c.2345+779A>C | ||||
| Intron_number | 13/23 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00040707 | |||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
