WormBase Tree Display for Variation: WBVar00107944
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WBVar00107944 | Evidence | Paper_evidence | WBPaper00030778 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00107944 | |||
Other_name | cbs43465 | ||||
HGVSg | chrII:g.7969000T>A | ||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc0058 | |
Flanking_sequences | atcttccagattgctatacgaagtttttcagtagagggattgctaacctt | accgaatccaagttgctggcggcggaattcatccgcggaagagtatccat | |||
Mapping_target | cb25.fpc0058 | ||||
Type_of_mutation | Substitution | T | A | ||
SeqStatus | Sequenced | ||||
Variation_type (4) | |||||
Origin | Species | Caenorhabditis briggsae | |||
Strain | WBStrain00041077 | ||||
Laboratory | CP | ||||
Person | WBPerson3706 | ||||
WBPerson227 | |||||
WBPerson225 | |||||
Status | Live | ||||
Affects | Gene | WBGene00025929 | |||
Transcript | CBG02975a.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | CBG02975a.1:c.51A>T | ||||
HGVSp | CBP41634.1:p.Val17%3D | ||||
cDNA_position | 68 | ||||
CDS_position | 51 | ||||
Protein_position | 17 | ||||
Exon_number | 2/26 | ||||
Codon_change | gtA/gtT | ||||
Amino_acid_change | V | ||||
CBG02975b.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | CBG02975b.1:c.51A>T | ||||
HGVSp | CBP39554.1:p.Val17%3D | ||||
cDNA_position | 51 | ||||
CDS_position | 51 | ||||
Protein_position | 17 | ||||
Exon_number | 1/22 | ||||
Codon_change | gtA/gtT | ||||
Amino_acid_change | V | ||||
CBG02975c.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | CBG02975c.1:c.51A>T | ||||
HGVSp | CBP46799.1:p.Val17%3D | ||||
cDNA_position | 68 | ||||
CDS_position | 51 | ||||
Protein_position | 17 | ||||
Exon_number | 2/25 | ||||
Codon_change | gtA/gtT | ||||
Amino_acid_change | V | ||||
CBG02975d.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | CBG02975d.1:c.51A>T | ||||
HGVSp | CBP42006.1:p.Val17%3D | ||||
cDNA_position | 68 | ||||
CDS_position | 51 | ||||
Protein_position | 17 | ||||
Exon_number | 2/24 | ||||
Codon_change | gtA/gtT | ||||
Amino_acid_change | V | ||||
CBG02975e.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | CBG02975e.1:c.51A>T | ||||
HGVSp | CBP40048.1:p.Val17%3D | ||||
cDNA_position | 68 | ||||
CDS_position | 51 | ||||
Protein_position | 17 | ||||
Exon_number | 2/25 | ||||
Codon_change | gtA/gtT | ||||
Amino_acid_change | V | ||||
Reference | WBPaper00030778 | ||||
Remark | Predicted by: ssaha-SNP v2.0 | ||||
This SNP was observed in 1 sequencing read(s) | |||||
Method | SNP |