WormBase Tree Display for Variation: WBVar00108441

WBVar00108441 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00108441
    Other_name: cbs43962
    HGVSg: chrIII:g.10933718T>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0066
    Flanking_sequences: attttagagtatactaaacaaaaatagagcttcaattttgtaattaacaa tttttgctaaaaattcatcttgataagataaaccgctcaaaacaagccaa
    Mapping_target: cb25.fpc0066
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CCNGG Bme1390I, BssKI, BstSCI, MspR9I, ScrFI 1000
        CCWGG BseBI, BsiLI, Bst2UI, BstNI, BstOI, EcoRII, MvaI, Psp6I, PspGI 1000
        ACCWGGT MabI, SexAI 1000
        AATT Sse9I, TasI, Tsp509I, TspEI 226 182 152 138 60 57 34 27 24 21 20 20 14 10 8 7
      Polymorphic_strain_digest: CCNGG Bme1390I, BssKI, BstSCI, MspR9I, ScrFI 913 87
        CCWGG BseBI, BsiLI, Bst2UI, BstNI, BstOI, EcoRII, MvaI, Psp6I, PspGI 913 87
        ACCWGGT MabI, SexAI 911 89
        AATT Sse9I, TasI, Tsp509I, TspEI 226 182 152 138 60 57 34 27 24 21 21 20 20 10 8
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00026410
    Transcript: CBG03570.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG03570.1:c.114+195T>C
        Intron_number: 3/7
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP