WormBase Tree Display for Variation: WBVar00108443

WBVar00108443 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00108443
    Other_name: cbs43964
      cb43964 Paper_evidence: WBPaper00055507
    HGVSg: chrIII:g.10934130T>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0066
    Flanking_sequences: tatcttttacaaaaaccgagataaa caggtcaaagttgacggtttggtgg
    Mapping_target: cb25.fpc0066
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CCNGG Bme1390I, BssKI, BstSCI, MspR9I, ScrFI 770 230
        CCWGG BseBI, BsiLI, Bst2UI, BstNI, BstOI, EcoRII, MvaI, Psp6I, PspGI 770 230
        ACCWGGT MabI, SexAI 1000
        AATT Sse9I, TasI, Tsp509I, TspEI 226 149 139 97 62 60 34 34 31 27 24 20 16 15 14 14 14 9 8 7
      Polymorphic_strain_digest: CCNGG Bme1390I, BssKI, BstSCI, MspR9I, ScrFI 501 269 230
        CCWGG BseBI, BsiLI, Bst2UI, BstNI, BstOI, EcoRII, MvaI, Psp6I, PspGI 501 269 230
        ACCWGGT MabI, SexAI 501 499
        AATT Sse9I, TasI, Tsp509I, TspEI 226 149 139 97 62 60 34 34 31 27 24 21 20 16 15 14 14 9 8
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00026410
    Transcript: CBG03570.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG03570.1:c.114+607T>C
        Intron_number: 3/7
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP