WormBase Tree Display for Variation: WBVar00109135
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| WBVar00109135 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00109135 | ||||
| Other_name | cbs44656 | |||||
| cb44656 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrII:g.4848833T>G | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0072a | ||
| Flanking_sequences | taagccgtgacttacttttttctag | tcatgacctgcatttttctaggcca | ||||
| Mapping_target | cb25.fpc0072a | |||||
| Type_of_mutation | Substitution | T | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 429 266 237 35 25 8 | ||
| TTTAAA | AhaIII, DraI | 562 438 | ||||
| CCTAGG | AvrII, BlnI, BspA2I, XmaJI | 1000 | ||||
| CCNNGG | BsaJI, BseDI, BssECI, SecI | 548 340 112 | ||||
| CCWWGG | BssT1I, Eco130I, EcoT14I, ErhI, StyI | 548 452 | ||||
| CAC | HindI | 241 171 128 116 65 47 43 39 36 33 25 16 12 12 10 4 2 | ||||
| GANTC | HinfI | 458 230 109 80 64 32 8 8 8 3 | ||||
| TTAA | MseI, Tru1I, Tru9I | 287 185 165 118 103 57 53 32 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 429 274 237 35 25 | |||
| TTTAAA | AhaIII, DraI | 1000 | ||||
| CCTAGG | AvrII, BlnI, BspA2I, XmaJI | 505 495 | ||||
| CCNNGG | BsaJI, BseDI, BssECI, SecI | 505 340 112 43 | ||||
| CCWWGG | BssT1I, Eco130I, EcoT14I, ErhI, StyI | 505 452 43 | ||||
| CAC | HindI | 236 171 128 116 65 47 43 39 36 33 25 16 12 12 10 5 4 2 | ||||
| GANTC | HinfI | 287 230 171 109 80 64 32 8 8 8 3 | ||||
| TTAA | MseI, Tru1I, Tru9I | 287 186 165 117 103 57 53 32 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00026966 | ||||
| Transcript | CBG04253a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG04253a.1:c.2941-239A>C | |||||
| Intron_number | 14/22 | |||||
| CBG04253b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG04253b.1:c.2962-239A>C | |||||
| Intron_number | 14/22 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
