WormBase Tree Display for Variation: WBVar00109145

WBVar00109145 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00109145
    Other_name: cbs44666
      cb44666 Paper_evidence: WBPaper00055507
    HGVSg: chrII:g.4860296T>A
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0072a
    Flanking_sequences: aaattcggaaatacaagagctcaaa ttttcgaaaaatcggaattttcgat
    Mapping_target: cb25.fpc0072a
    Type_of_mutation: Substitution: T A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 209 85 54 44 41 38 35 34 34 34 27 26 25 22 19 19 18 17 17 17 16 15 15 10 10 10 9 9 9 8 8 8 8 8 8 7 7 7 7 6
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 496 133 127 84 59 58 27 16
        TCGA EsaBC3I, TaqI, TthHB8I 249 128 127 126 84 59 41 34 34 27 26 17 16 15 9 8
        TCNNGA Hpy178III, Hp, y188III 538 336 87 39
        TCNGA Hpy188I 201 190 142 138 83 71 33 26 26 25 24 24 17
        CAYNNNNRTG MslI, SmiMI 608 392
        AATT Sse9I, TasI, Tsp509I, TspEI 189 85 44 41 38 34 34 31 27 26 23 22 21 19 19 18 17 17 17 16 15 15 15 12 10 10 10 10 10 10 10 9 9 9 8 8 8 8 8 8 8 7 7 7 7 7 6 6 5
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 209 85 55 54 44 41 38 35 34 34 34 26 19 19 18 17 17 17 17 16 15 10 10 10 10 9 9 9 8 8 8 8 8 8 7 7 7 7 7 6
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 496 127 105 84 59 58 27 16 16 12
        TCGA EsaBC3I, TaqI, TthHB8I 249 128 127 105 84 59 43 41 34 27 26 17 16 15 13 8 8
        TCNNGA Hpy178III, Hp, y188III 520 336 87 39 18
        TCNGA Hpy188I 272 190 142 138 116 26 26 25 24 24 17
        CAYNNNNRTG MslI, SmiMI 1000
        AATT Sse9I, TasI, Tsp509I, TspEI 189 85 55 44 41 38 34 34 31 26 23 21 19 19 17 17 17 17 16 15 12 10 10 10 10 10 10 10 10 9 9 9 8 8 8 8 8 8 8 8 7 7 7 7 7 7 6 6 5
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00026966
      WBGene00026969
    Transcript: CBG04253a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG04253a.1:c.456+1137A>T
        Intron_number: 4/22
      CBG04253b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG04253b.1:c.456+1137A>T
        Intron_number: 4/22
      CBG04256.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG04256.1:c.427-91T>A
        Intron_number: 4/5
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP