WormBase Tree Display for Variation: WBVar00109149

WBVar00109149 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00109149
    Other_name: cbs44670
      cb44670 Paper_evidence: WBPaper00055507
    HGVSg: chrII:g.4860353G>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0072a
    Flanking_sequences: attttcagaaattcaaaaatttata aaaatcgaaaaattcaaaattttca
    Mapping_target: cb25.fpc0072a
    Type_of_mutation: Substitution: G T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 209 111 85 44 41 38 34 34 34 30 27 26 22 19 19 18 17 17 16 15 15 10 10 9 9 9 8 8 8 8 8 8 7 7 7 7 6
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 553 127 84 76 59 58 27 16
        TCGA EsaBC3I, TaqI, TthHB8I 249 185 127 84 69 59 41 34 34 27 26 17 16 15 9 8
        TCNNGA Hpy178III, Hpy188III 595 336 69
        TCNGA Hpy188I 247 201 138 85 83 71 33 26 26 25 24 24 17
        CAYNNNNRTG MslI, SmiMI 551 449
        AATT Sse9I, TasI, Tsp509I, TspEI 189 85 76 44 41 38 34 34 31 27 26 22 21 19 19 18 17 17 17 16 15 15 10 10 10 10 10 9 9 9 8 8 8 8 8 8 7 7 7 7 7 6 6 4 3
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 209 111 85 55 44 41 38 34 34 34 30 26 19 19 17 17 17 16 15 10 10 10 9 9 9 8 8 8 8 8 8 7 7 7 7 6
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 553 127 84 60 59 58 27 16 16
        TCGA EsaBC3I, TaqI, TthHB8I 249 185 127 84 61 59 43 41 34 27 26 17 16 15 8 8
        TCNNGA Hpy178III, Hpy188III 577 336 69 18
        TCNGA Hpy188I 272 247 138 116 85 26 26 25 24 24 17
        CAYNNNNRTG MslI, SmiMI 1000
        AATT Sse9I, TasI, Tsp509I, TspEI 189 85 76 55 44 41 38 34 34 31 26 21 19 19 17 17 17 17 16 15 10 10 10 10 10 10 9 9 9 8 8 8 8 8 8 7 7 7 7 7 6 6 4 3
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00026966
      WBGene00026969
    Transcript: CBG04253a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG04253a.1:c.456+1080C>A
        Intron_number: 4/22
      CBG04253b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG04253b.1:c.456+1080C>A
        Intron_number: 4/22
      CBG04256.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG04256.1:c.427-34G>T
        Intron_number: 4/5
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP