WormBase Tree Display for Variation: WBVar00109164

WBVar00109164 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00109164
    Other_name: cbs44685
    HGVSg: chrII:g.5049591A>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0072a
    Flanking_sequences: aattcgcgagcttgaaacatgaatggaacatcgtagagtggacggaattg cggccaactgatggctgtttgtcttctgcagtctcttttggaagtctgac
    Mapping_target: cb25.fpc0072a
    Type_of_mutation: Substitution: A T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest (19)
      Polymorphic_strain_digest (19)
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00027000
    Transcript: CBG04292.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: CBG04292.1:c.1167T>A
        HGVSp: CBP01117.1:p.Arg389%3D
        cDNA_position: 1194
        CDS_position: 1167
        Protein_position: 389
        Exon_number: 3/6
        Codon_change: cgT/cgA
        Amino_acid_change: R
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP