WormBase Tree Display for Variation: WBVar00109178
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| WBVar00109178 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00109178 | ||||
| Other_name | cbs44699 | |||||
| HGVSg | chrII:g.5099372A>G | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0072a | ||
| Flanking_sequences | taatttacttctttacctttctgaatacttgaattcagccccattgttgt | aggctttcacgggggtcatattaaattaactatatcaaatctaccgtaaa | ||||
| Mapping_target | cb25.fpc0072a | |||||
| Type_of_mutation | Substitution | A | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 371 210 131 99 76 73 20 20 | ||
| GAATTC | EcoRI, FunII | 520 480 | ||||
| CAC | HindI | 247 240 143 116 73 58 54 40 15 11 3 | ||||
| TCNNGA | Hpy178III, Hpy188III | 675 153 151 21 | ||||
| TCNGA | Hpy188I | 462 376 95 67 | ||||
| GTNAC | MaeIII | 955 45 | ||||
| TTAA | MseI, Tru1I, Tru9I | 254 190 189 177 107 78 5 | ||||
| CAYNNNNRTG | MslI, SmiMI | 1000 | ||||
| GTSAC | NmuCI, Tsp45I | 1000 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 146 132 114 99 64 63 58 48 43 40 34 33 30 20 20 18 17 12 9 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 371 210 149 131 99 20 20 | |||
| GAATTC | EcoRI, FunII | 1000 | ||||
| CAC | HindI | 247 240 143 107 73 54 40 30 19 15 11 9 9 3 | ||||
| TCNNGA | Hpy178III, Hpy188III | 606 153 151 69 21 | ||||
| TCNGA | Hpy188I | 529 376 95 | ||||
| GTNAC | MaeIII | 486 469 45 | ||||
| TTAA | MseI, Tru1I, Tru9I | 254 190 189 177 78 66 41 5 | ||||
| CAYNNNNRTG | MslI, SmiMI | 505 495 | ||||
| GTSAC | NmuCI, Tsp45I | 514 486 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 146 132 114 99 64 63 58 58 48 43 34 33 30 20 20 17 12 9 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00027010 | ||||
| Transcript | CBG04307.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG04307.1:c.*1202A>G | |||||
| cDNA_position | 3918 | |||||
| Exon_number | 21/21 | |||||
| CBG04307.2 | VEP_consequence | 3_prime_UTR_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG04307.2:c.*1246A>G | |||||
| cDNA_position | 3536 | |||||
| Exon_number | 19/19 | |||||
| CBG04307.3 | VEP_consequence | 3_prime_UTR_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG04307.3:c.*1212A>G | |||||
| cDNA_position | 3502 | |||||
| Exon_number | 20/20 | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
