WormBase Tree Display for Variation: WBVar00110642

WBVar00110642 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00110642
    Other_name: cbs46163
      cb46163 Paper_evidence: WBPaper00055507
    HGVSg: chrIV:g.6700184T>A
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0110
    Flanking_sequences: catagtattgccttctgctttgtcc tttttttttcatttccattgcagtc
    Mapping_target: cb25.fpc0110
    Type_of_mutation: Substitution: A T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GTAC AfaI, Csp6I, RsaI 849 116 35
        GTNAC MaeIII 741 259
        WGTACW TatI 847 153
      Polymorphic_strain_digest: GTAC AfaI, Csp6I, RsaI 884 116
        GTNAC MaeIII 454 287 259
        WGTACW TatI 1000
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00027947
    Transcript: CBG05508a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05508a.1:c.5284-24A>T
        Intron_number: 25/28
      CBG05508b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05508b.1:c.5283+152A>T
        Intron_number: 24/26
      CBG05508c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05508c.1:c.5182-24A>T
        Intron_number: 24/26
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP