WormBase Tree Display for Variation: WBVar00110643

WBVar00110643 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00110643
    Other_name: cbs46164
      cb46164 Paper_evidence: WBPaper00055507
    HGVSg: chrIV:g.6700134C>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0110
    Flanking_sequences: cgcgatcgcctgaaaccgtccagtt cttccgaaacgagctagttcggaaa
    Mapping_target: cb25.fpc0110
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GTAC AfaI, Csp6I, RsaI 799 166 35
        GTNAC MaeIII 765 209 16 10
        WGTACW TatI 797 203
      Polymorphic_strain_digest: GTAC AfaI, Csp6I, RsaI 834 166
        GTNAC MaeIII 478 287 209 16 10
        WGTACW TatI 1000
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00027947
    Transcript: CBG05508a.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: CBG05508a.1:c.5310G>A
        HGVSp: CBP38433.1:p.Leu1770%3D
        cDNA_position: 7580
        CDS_position: 5310
        Protein_position: 1770
        Exon_number: 26/29
        Codon_change: ttG/ttA
        Amino_acid_change: L
      CBG05508b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05508b.1:c.5284-160G>A
        Intron_number: 24/26
      CBG05508c.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: CBG05508c.1:c.5208G>A
        HGVSp: CBP43606.1:p.Leu1736%3D
        cDNA_position: 7478
        CDS_position: 5208
        Protein_position: 1736
        Exon_number: 25/27
        Codon_change: ttG/ttA
        Amino_acid_change: L
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP