WormBase Tree Display for Variation: WBVar00130746

WBVar00130746 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00130746
    Other_name: cbs66267
    HGVSg: chrI:g.6924391T>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4292a
    Flanking_sequences: ttttcagttgattttcagcatttttagaagtctggagctcggctgtcaag taccgatcactttgaaaaaactgcagagtgtaaaatagacctagattgaa
    Mapping_target: cb25.fpc4292a
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: AGGCCT AatI, Eco147I, PceI, SseBI, StuI 1000
        AGCT AluI 366 200 152 120 88 42 32
        GGCC BshFI, BshI, BsuRI, HaeIII, PalI 619 353 28
        RGCY CviJI, CviTI 195 194 159 152 120 88 42 17 15 13 5
        TGCA CviRI, HpyCH4V 443 250 197 76 34
        WGGCCW HaeI 647 353
        TCNGA Hpy188I 535 124 96 91 74 62 11 7
        GTNAC MaeIII 502 498
      Polymorphic_strain_digest: AGGCCT AatI, Eco147I, PceI, SseBI, StuI 539 461
        AGCT AluI 366 187 152 120 88 42 32 13
        GGCC BshFI, BshI, BsuRI, HaeIII, PalI 461 353 158 28
        RGCY CviJI, CviTI 194 159 152 147 120 88 42 40 17 15 13 8 5
        TGCA CviRI, HpyCH4V 390 250 197 76 53 34
        WGGCCW HaeI 461 353 186
        TCNGA Hpy188I 597 124 96 91 74 11 7
        GTNAC MaeIII 1000
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00040592
    Transcript: CBG21923a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG21923a.1:c.801-168A>G
        Intron_number: 4/11
      CBG21923b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG21923b.1:c.801-168A>G
        Intron_number: 4/10
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP