WormBase Tree Display for Variation: WBVar00130748

WBVar00130748 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00130748
    Other_name: cbs66269
    HGVSg: chrI:g.6924430A>G
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4292a
    Flanking_sequences: cggctgtcaagttaccgatcactttgaaaaaactgcagagtgtaaaatag cctagattgaaaactttgcattcagcaaagtttttgaaatcccaagtttt
    Mapping_target: cb25.fpc4292a
    Type_of_mutation: Substitution: A G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: AGGCCT AatI, Eco147I, PceI, SseBI, StuI 1000
        AGCT AluI 327 200 159 152 88 42 32
        GGCC BshFI, BshI, BsuRI, HaeIII, PalI 658 314 28
        RGCY CviJI, CviTI 195 194 159 152 120 88 42 17 15 13 5
        TGCA CviRI, HpyCH4V 482 250 158 76 34
        WGGCCW HaeI 686 314
        TCNGA Hpy188I 7
        GTNAC MaeIII 541 459
      Polymorphic_strain_digest: AGGCCT AatI, Eco147I, PceI, SseBI, StuI 500 500
        AGCT AluI 327 187 159 152 88 42 32 13
        GGCC BshFI, BshI, BsuRI, HaeIII, PalI 500 314 158 28
        RGCY CviJI, CviTI 194 159 152 147 120 88 42 40 17 15 13 8 5
        TGCA CviRI, HpyCH4V 429 250 158 76 53 34
        WGGCCW HaeI 500 314 186
        TCNGA Hpy188I 597 163 96 91 35 11 7
        GTNAC MaeIII 1000
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00040592
    Transcript: CBG21923a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG21923a.1:c.801-207T>C
        Intron_number: 4/11
      CBG21923b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG21923b.1:c.801-207T>C
        Intron_number: 4/10
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP