WormBase Tree Display for Variation: WBVar00130749
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WBVar00130749 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00130749 | ||||
Other_name | cbs66270 | |||||
HGVSg | chrI:g.6924446T>C | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc4292a | ||
Flanking_sequences | gatcactttgaaaaaactgcagagtgtaaaatagacctagattgaaaact | tgcattcagcaaagtttttgaaatcccaagtttttccgctgtttgccgat | ||||
Mapping_target | cb25.fpc4292a | |||||
Type_of_mutation | Substitution | T | C | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | AGGCCT | AatI, Eco147I, PceI, SseBI, StuI | 1000 | ||
AGCT | AluI | 311 200 175 152 88 42 32 | ||||
GGCC | BshFI, BshI, BsuRI, HaeIII, PalI | 674 298 28 | ||||
RGCY | CviJI, CviTI | 195 194 175 152 104 88 42 17 15 13 5 | ||||
TGCA | CviRI, HpyCH4V | 498 250 142 76 34 | ||||
WGGCCW | HaeI | 702 298 | ||||
TCNGA | Hpy188I | 535 179 96 91 62 19 11 7 | ||||
GTNAC | MaeIII | 557 443 | ||||
Polymorphic_strain_digest | AGGCCT | AatI, Eco147I, PceI, SseBI, StuI | 516 484 | |||
AGCT | AluI | 311 187 175 152 88 42 32 13 | ||||
GGCC | BshFI, BshI, BsuRI, HaeIII, PalI | 516 298 158 28 | ||||
RGCY | CviJI, CviTI | 194 175 152 147 104 88 42 40 17 15 13 8 5 | ||||
TGCA | CviRI, HpyCH4V | 445 250 142 76 53 34 | ||||
WGGCCW | HaeI | 516 298 186 | ||||
TCNGA | Hpy188I | 597 179 96 91 19 11 7 | ||||
GTNAC | MaeIII | 1000 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00040592 | ||||
Transcript | CBG21923a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | CBG21923a.1:c.801-223A>G | |||||
Intron_number | 4/11 | |||||
CBG21923b.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | CBG21923b.1:c.801-223A>G | |||||
Intron_number | 4/10 | |||||
Reference | WBPaper00030778 | |||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |