WormBase Tree Display for Variation: WBVar00130751

WBVar00130751 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00130751
    Other_name: cbs66272
    HGVSg: chrI:g.6924502A>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4292a
    Flanking_sequences: tcagcaaagtttttgaaatcccaagtttttccgctgtttgccgatttctg ataacacctattttttaccgttttcagtacaaaaacggaccaaaaatagg
    Mapping_target: cb25.fpc4292a
    Type_of_mutation: Substitution: A C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: AGGCCT AatI, Eco147I, PceI, SseBI, StuI 1000
        AGCT AluI 255 231 200 152 88 42 32
        GGCC BshFI, BshI, BsuRI, HaeIII, PalI 730 242 28
        RGCY CviJI, CviTI 231 195 194 152 88 48 42 17 15 13 5
        TGCA CviRI, HpyCH4V 554 250 86 76 34
        WGGCCW HaeI 758 242
        TCNGA Hpy188I 498 218 96 91 62 17 11 7
        GTNAC MaeIII 613 387
      Polymorphic_strain_digest: AGGCCT AatI, Eco147I, PceI, SseBI, StuI 572 428
        AGCT AluI 255 231 187 152 88 42 32 13
        GGCC BshFI, BshI, BsuRI, HaeIII, PalI 572 242 158 28
        RGCY CviJI, CviTI 231 194 152 147 88 48 42 40 17 15 13 8 5
        TGCA CviRI, HpyCH4V 501 250 86 76 53 34
        WGGCCW HaeI 572 242 186
        TCNGA Hpy188I 560 218 96 91 17 11 7
        GTNAC MaeIII 1000
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00040592
    Transcript: CBG21923a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG21923a.1:c.801-279T>G
        Intron_number: 4/11
      CBG21923b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG21923b.1:c.801-279T>G
        Intron_number: 4/10
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP