WormBase Tree Display for Variation: WBVar00142935
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WBVar00142935 | Name | Public_name | e51 | ||
---|---|---|---|---|---|
Other_name (18) | |||||
HGVSg | CHROMOSOME_I:g.7434408C>T | ||||
Sequence_details (5) | |||||
Variation_type | Engineered_allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain (64) | |||||
Laboratory | CB | ||||
KR | |||||
NCA | |||||
Person | WBPerson26471 | ||||
Status | Live | ||||
Linked_to | WBVar02146566 | ||||
Affects | Gene | WBGene00006752 | |||
Transcript | ZK524.2e.1 | VEP_consequence | stop_gained | ||
VEP_impact | HIGH | ||||
HGVSc | ZK524.2e.1:c.1411C>T | ||||
HGVSp | CE34626:p.Arg471Ter | ||||
cDNA_position | 1411 | ||||
CDS_position | 1411 | ||||
Protein_position | 471 | ||||
Exon_number | 11/30 | ||||
Codon_change | Cga/Tga | ||||
Amino_acid_change | R/* | ||||
ZK524.2c.1 | VEP_consequence | stop_gained | |||
VEP_impact | HIGH | ||||
HGVSc | ZK524.2c.1:c.388C>T | ||||
HGVSp | CE34624:p.Arg130Ter | ||||
cDNA_position | 388 | ||||
CDS_position | 388 | ||||
Protein_position | 130 | ||||
Exon_number | 3/22 | ||||
Codon_change | Cga/Tga | ||||
Amino_acid_change | R/* | ||||
ZK524.2f.1 | VEP_consequence | stop_gained | |||
VEP_impact | HIGH | ||||
HGVSc | ZK524.2f.1:c.1420C>T | ||||
HGVSp | CE43866:p.Arg474Ter | ||||
cDNA_position | 1420 | ||||
CDS_position | 1420 | ||||
Protein_position | 474 | ||||
Exon_number | 11/30 | ||||
Codon_change | Cga/Tga | ||||
Amino_acid_change | R/* | ||||
ZK524.2j.1 | VEP_consequence | stop_gained | |||
VEP_impact | HIGH | ||||
HGVSc | ZK524.2j.1:c.1375C>T | ||||
HGVSp | CE51718:p.Arg459Ter | ||||
cDNA_position | 1375 | ||||
CDS_position | 1375 | ||||
Protein_position | 459 | ||||
Exon_number | 11/29 | ||||
Codon_change | Cga/Tga | ||||
Amino_acid_change | R/* | ||||
ZK524.2k.1 | VEP_consequence | stop_gained | |||
VEP_impact | HIGH | ||||
HGVSc | ZK524.2k.1:c.1366C>T | ||||
HGVSp | CE51726:p.Arg456Ter | ||||
cDNA_position | 1366 | ||||
CDS_position | 1366 | ||||
Protein_position | 456 | ||||
Exon_number | 11/29 | ||||
Codon_change | Cga/Tga | ||||
Amino_acid_change | R/* | ||||
ZK524.2a.1 | VEP_consequence | stop_gained | |||
VEP_impact | HIGH | ||||
HGVSc | ZK524.2a.1:c.1411C>T | ||||
HGVSp | CE15371:p.Arg471Ter | ||||
cDNA_position | 1411 | ||||
CDS_position | 1411 | ||||
Protein_position | 471 | ||||
Exon_number | 11/30 | ||||
Codon_change | Cga/Tga | ||||
Amino_acid_change | R/* | ||||
ZK524.2i.1 | VEP_consequence | stop_gained | |||
VEP_impact | HIGH | ||||
HGVSc | ZK524.2i.1:c.1420C>T | ||||
HGVSp | CE32552:p.Arg474Ter | ||||
cDNA_position | 1420 | ||||
CDS_position | 1420 | ||||
Protein_position | 474 | ||||
Exon_number | 11/29 | ||||
Codon_change | Cga/Tga | ||||
Amino_acid_change | R/* | ||||
ZK524.2d.1 | VEP_consequence | stop_gained | |||
VEP_impact | HIGH | ||||
HGVSc | ZK524.2d.1:c.1411C>T | ||||
HGVSp | CE34625:p.Arg471Ter | ||||
cDNA_position | 1411 | ||||
CDS_position | 1411 | ||||
Protein_position | 471 | ||||
Exon_number | 11/31 | ||||
Codon_change | Cga/Tga | ||||
Amino_acid_change | R/* | ||||
ZK524.2h.1 | VEP_consequence | stop_gained | |||
VEP_impact | HIGH | ||||
HGVSc | ZK524.2h.1:c.388C>T | ||||
HGVSp | CE51759:p.Arg130Ter | ||||
cDNA_position | 388 | ||||
CDS_position | 388 | ||||
Protein_position | 130 | ||||
Exon_number | 3/21 | ||||
Codon_change | Cga/Tga | ||||
Amino_acid_change | R/* | ||||
Interactor | WBInteraction000518950 | ||||
Isolation | Mutagen | EMS | |||
Genetics | Interpolated_map_position | I | 2.07389 | ||
Mapping_data | In_2_point (20) | ||||
In_multi_point (87) | |||||
In_pos_neg_data | 466 | ||||
470 | |||||
2514 | |||||
5851 | |||||
5853 | |||||
5963 | |||||
8066 | |||||
8086 | |||||
Description (2) | |||||
Reference (29) | |||||
Remark | Old Mapping_target ZK524 updated based on the VEP analysis pipeline to C44E1. | ||||
Manually curated Gene associations preserved as a text remark so that VEP is the canonical predictor of consequence: WBGene00006752 Opal_UGA R to STOP | Person_evidence | WBPerson26471" | |||
WBPerson26471 | |||||
Method | Substitution_allele |