WormBase Tree Display for Variation: WBVar00142935
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WBVar00142935 | Name | Public_name | e51 | ||||
---|---|---|---|---|---|---|---|
Other_name (18) | |||||||
HGVSg | CHROMOSOME_I:g.7434408C>T | ||||||
Sequence_details | SMap | S_parent | Sequence | C44E1 | |||
Flanking_sequences | AAGATGACACTCACCAATATGATGAAGTTGATCGTGGATCC | GAGTATCTTTCACAAGAACACCATCAGTAGATAGAACAG | |||||
Mapping_target | C44E1 | ||||||
Type_of_mutation | Substitution | C | T | Person_evidence | WBPerson26471 | ||
SeqStatus | Sequenced | ||||||
Variation_type | Engineered_allele | ||||||
Origin | Species | Caenorhabditis elegans | |||||
Strain | WBStrain00000461 | ||||||
WBStrain00000462 | |||||||
WBStrain00000463 | |||||||
WBStrain00000465 | |||||||
WBStrain00000466 | |||||||
WBStrain00000467 | |||||||
WBStrain00000468 | |||||||
WBStrain00000469 | |||||||
WBStrain00000470 | |||||||
WBStrain00000471 | |||||||
WBStrain00000472 | |||||||
WBStrain00000473 | |||||||
WBStrain00000474 | |||||||
WBStrain00000477 | |||||||
WBStrain00000481 | |||||||
WBStrain00000482 | |||||||
WBStrain00000483 | |||||||
WBStrain00000493 | |||||||
WBStrain00003935 | |||||||
WBStrain00003938 | |||||||
WBStrain00004086 | |||||||
WBStrain00004960 | |||||||
WBStrain00005004 | |||||||
WBStrain00006206 | |||||||
WBStrain00006261 | |||||||
WBStrain00007186 | |||||||
WBStrain00007300 | |||||||
WBStrain00007986 | |||||||
WBStrain00007987 | |||||||
WBStrain00008014 | |||||||
WBStrain00022553 | |||||||
WBStrain00022567 | |||||||
WBStrain00022569 | |||||||
WBStrain00022576 | |||||||
WBStrain00023813 | |||||||
WBStrain00023902 | |||||||
WBStrain00023924 | |||||||
WBStrain00023925 | |||||||
WBStrain00023926 | |||||||
WBStrain00023927 | |||||||
WBStrain00023928 | |||||||
WBStrain00023929 | |||||||
WBStrain00023930 | |||||||
WBStrain00023931 | |||||||
WBStrain00023936 | |||||||
WBStrain00023941 | |||||||
WBStrain00023942 | |||||||
WBStrain00027013 | |||||||
WBStrain00027039 | |||||||
WBStrain00027077 | |||||||
WBStrain00027308 | |||||||
WBStrain00028972 | |||||||
WBStrain00030685 | |||||||
WBStrain00033905 | |||||||
WBStrain00034438 | |||||||
WBStrain00034776 | |||||||
WBStrain00034777 | |||||||
WBStrain00040443 | |||||||
WBStrain00047195 | |||||||
WBStrain00050644 | |||||||
WBStrain00050645 | |||||||
WBStrain00055671 | |||||||
WBStrain00057280 | |||||||
WBStrain00057282 | |||||||
Laboratory | CB | ||||||
KR | |||||||
NCA | |||||||
Person | WBPerson26471 | ||||||
Status | Live | ||||||
Linked_to | WBVar02146566 | ||||||
Affects | Gene | WBGene00006752 | |||||
Transcript | ZK524.2e.1 | VEP_consequence | stop_gained | ||||
VEP_impact | HIGH | ||||||
HGVSc | ZK524.2e.1:c.1411C>T | ||||||
HGVSp | CE34626:p.Arg471Ter | ||||||
cDNA_position | 1411 | ||||||
CDS_position | 1411 | ||||||
Protein_position | 471 | ||||||
Exon_number | 11/30 | ||||||
Codon_change | Cga/Tga | ||||||
Amino_acid_change | R/* | ||||||
ZK524.2c.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | ZK524.2c.1:c.388C>T | ||||||
HGVSp | CE34624:p.Arg130Ter | ||||||
cDNA_position | 388 | ||||||
CDS_position | 388 | ||||||
Protein_position | 130 | ||||||
Exon_number | 3/22 | ||||||
Codon_change | Cga/Tga | ||||||
Amino_acid_change | R/* | ||||||
ZK524.2f.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | ZK524.2f.1:c.1420C>T | ||||||
HGVSp | CE43866:p.Arg474Ter | ||||||
cDNA_position | 1420 | ||||||
CDS_position | 1420 | ||||||
Protein_position | 474 | ||||||
Exon_number | 11/30 | ||||||
Codon_change | Cga/Tga | ||||||
Amino_acid_change | R/* | ||||||
ZK524.2j.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | ZK524.2j.1:c.1375C>T | ||||||
HGVSp | CE51718:p.Arg459Ter | ||||||
cDNA_position | 1375 | ||||||
CDS_position | 1375 | ||||||
Protein_position | 459 | ||||||
Exon_number | 11/29 | ||||||
Codon_change | Cga/Tga | ||||||
Amino_acid_change | R/* | ||||||
ZK524.2k.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | ZK524.2k.1:c.1366C>T | ||||||
HGVSp | CE51726:p.Arg456Ter | ||||||
cDNA_position | 1366 | ||||||
CDS_position | 1366 | ||||||
Protein_position | 456 | ||||||
Exon_number | 11/29 | ||||||
Codon_change | Cga/Tga | ||||||
Amino_acid_change | R/* | ||||||
ZK524.2a.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | ZK524.2a.1:c.1411C>T | ||||||
HGVSp | CE15371:p.Arg471Ter | ||||||
cDNA_position | 1411 | ||||||
CDS_position | 1411 | ||||||
Protein_position | 471 | ||||||
Exon_number | 11/30 | ||||||
Codon_change | Cga/Tga | ||||||
Amino_acid_change | R/* | ||||||
ZK524.2i.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | ZK524.2i.1:c.1420C>T | ||||||
HGVSp | CE32552:p.Arg474Ter | ||||||
cDNA_position | 1420 | ||||||
CDS_position | 1420 | ||||||
Protein_position | 474 | ||||||
Exon_number | 11/29 | ||||||
Codon_change | Cga/Tga | ||||||
Amino_acid_change | R/* | ||||||
ZK524.2d.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | ZK524.2d.1:c.1411C>T | ||||||
HGVSp | CE34625:p.Arg471Ter | ||||||
cDNA_position | 1411 | ||||||
CDS_position | 1411 | ||||||
Protein_position | 471 | ||||||
Exon_number | 11/31 | ||||||
Codon_change | Cga/Tga | ||||||
Amino_acid_change | R/* | ||||||
ZK524.2h.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | ZK524.2h.1:c.388C>T | ||||||
HGVSp | CE51759:p.Arg130Ter | ||||||
cDNA_position | 388 | ||||||
CDS_position | 388 | ||||||
Protein_position | 130 | ||||||
Exon_number | 3/21 | ||||||
Codon_change | Cga/Tga | ||||||
Amino_acid_change | R/* | ||||||
Interactor | WBInteraction000518950 | ||||||
Isolation | Mutagen | EMS | |||||
Genetics | Interpolated_map_position | I | 2.07389 | ||||
Mapping_data | In_2_point (20) | ||||||
In_multi_point (87) | |||||||
In_pos_neg_data | 466 | ||||||
470 | |||||||
2514 | |||||||
5851 | |||||||
5853 | |||||||
5963 | |||||||
8066 | |||||||
8086 | |||||||
Description (2) | |||||||
Reference (29) | |||||||
Remark | Old Mapping_target ZK524 updated based on the VEP analysis pipeline to C44E1. | ||||||
Manually curated Gene associations preserved as a text remark so that VEP is the canonical predictor of consequence: WBGene00006752 Opal_UGA R to STOP | Person_evidence | WBPerson26471" | |||||
WBPerson26471 | |||||||
Method | Substitution_allele |