WormBase Tree Display for Variation: WBVar00143024
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| WBVar00143024 | Evidence | Paper_evidence | WBPaper00000779 | ||
|---|---|---|---|---|---|
| Name | Public_name | e190 | |||
| Other_name | F11C3.3.1:c.4617_5017del | ||||
| CE09349:p.Ile1539MetfsTer6 | |||||
| HGVSg | CHROMOSOME_I:g.14857211_14857611del | ||||
| Sequence_details | SMap | S_parent | Sequence | F32A7 | |
| Flanking_sequences | acgctctgtccacgaaatgcaaaagatcat | gagccgacacccgtgaacaattcttcaacg | |||
| Mapping_target | F32A7 | ||||
| Type_of_mutation | Deletion | ||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (13) | |||||
| Laboratory | CB | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00006789 | |||
| Transcript | F11C3.3.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | F11C3.3.1:c.4617_5017del | ||||
| HGVSp | CE09349:p.Ile1539MetfsTer6 | ||||
| cDNA_position | 4649-5049 | ||||
| CDS_position | 4617-5017 | ||||
| Protein_position | 1539-1673 | ||||
| Exon_number | 7/11 | ||||
| Codon_change | atCCGCCGTCTTGAGATTGAGAAGGAAGAACTCCAACACGCTTTGGACGAGGCTGAGGCTGCCCTTGAAGCTGAAGAGAGCAAGGTTCTCCGCGCCCAGGTTGAAGTTTCCCAGATCCGTTCCGAAATCGAGAAACGCATCCAGGAGAAGGAGGAAGAGTTCGAGAACACGAGAAAGAACCACGCCCGCGCTCTTGAATCAATGCAAGCTTCCCTCGAGACCGAAGCTAAAGGAAAGGCCGAACTTCTCCGCATCAAGAAGAAGCTCGAGGGAGATATCAACGAGCTCGAGATCGCTTTGGACCACGCCAACAAGGCTAACGCCGATGCCCAGAAGAACTTGAAGAGATACCAAGAGCAAGTCCGCGAGTTGCAATTGCAAGTCGAGGAGGAGCAACGCAATGga/atga | ||||
| Amino_acid_change | IRRLEIEKEELQHALDEAEAALEAEESKVLRAQVEVSQIRSEIEKRIQEKEEEFENTRKNHARALESMQASLETEAKGKAELLRIKKKLEGDINELEIALDHANKANADAQKNLKRYQEQVRELQLQVEEEQRNG/MX | ||||
| Interactor | WBInteraction000518611 | ||||
| WBInteraction000538533 | |||||
| WBInteraction000555983 | |||||
| Isolation | Mutagen | EMS | Paper_evidence | WBPaper00000779 | |
| Genetics | Interpolated_map_position | I | 27.9601 | ||
| Mapping_data | In_2_point (14) | ||||
| In_multi_point (20) | |||||
| In_pos_neg_data | 333 | ||||
| Marked_rearrangement | hT2[unc-54(e190)] | ||||
| Description | Phenotype (13) | ||||
| Phenotype_not_observed (3) | |||||
| Reference (33) | |||||
| Method | Deletion_allele |
