WormBase Tree Display for Variation: WBVar00143287
expand all nodes | collapse all nodes | view schema
WBVar00143287 | Evidence | Paper_evidence | WBPaper00005955 | |||
---|---|---|---|---|---|---|
Name | Public_name | e541 | ||||
Other_name | Y37D8A.13.1:c.1669G>A | |||||
CE20217:p.Ala557Thr | ||||||
HGVSg | CHROMOSOME_III:g.12884095C>T | |||||
Sequence_details | SMap | S_parent | Sequence | Y37D8A | ||
Flanking_sequences | cagaagctttggggacgagaagctcgagtt | cggagccagtgtgctttgagcagaatacca | ||||
Mapping_target | Y37D8A | |||||
Type_of_mutation | Substitution | g | a | |||
SeqStatus | Sequenced | |||||
Variation_type | Allele | |||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00004180 | |||||
WBStrain00006386 | ||||||
Laboratory | CB | |||||
Status | Live | |||||
Affects | Gene | WBGene00006804 | ||||
Transcript | Y37D8A.13.1 | VEP_consequence | missense_variant | |||
VEP_impact | MODERATE | |||||
SIFT | 0 | deleterious | ||||
PolyPhen | 1 | probably_damaging | ||||
HGVSc | Y37D8A.13.1:c.1669G>A | |||||
HGVSp | CE20217:p.Ala557Thr | |||||
cDNA_position | 1800 | |||||
CDS_position | 1669 | |||||
Protein_position | 557 | |||||
Exon_number | 6/8 | |||||
Codon_change | Gcg/Acg | |||||
Amino_acid_change | A/T | |||||
Interactor | WBInteraction000518928 | |||||
Genetics | Interpolated_map_position | III | 19.2674 | |||
Mapping_data | In_2_point | 76 | ||||
88 | ||||||
4235 | ||||||
In_multi_point | 63 | |||||
256 | ||||||
1505 | ||||||
1660 | ||||||
3263 | ||||||
In_pos_neg_data | 353 | |||||
5733 | ||||||
Description (2) | ||||||
Reference | WBPaper00017709 | |||||
WBPaper00032446 | ||||||
WBPaper00000031 | ||||||
WBPaper00001105 | ||||||
WBPaper00016473 | ||||||
WBPaper00019269 | ||||||
WBPaper00011608 | ||||||
Method | Substitution_allele |