WormBase Tree Display for Variation: WBVar00143591

WBVar00143591 Evidence: Paper_evidence: WBPaper00002751
  Name: Public_name: e911
    Other_name: CE39210:p.Met198ThrfsTer7
      CE45243:p.Met198ThrfsTer7
      C01G10.11f.1:c.593_603del
      CE45264:p.Met107ThrfsTer7
      C01G10.11c.1:c.320_330del
      C01G10.11b.1:c.593_603del
      CE45251:p.Met58ThrfsTer7
      C01G10.11a.1:c.593_603del
      C01G10.11d.1:c.173_183del
      CE39211:p.Met198ThrfsTer7
    HGVSg: CHROMOSOME_V:g.15076958_15076968del
  Sequence_details: SMap: S_parent: Sequence: C01G10
    Flanking_sequences: cgtttttagtcatgcgatttcactggctcaa cgaacgatggaatcagttgattcaatgtatt
    Mapping_target: C01G10
    Type_of_mutation: Deletion: tgatgacggat Paper_evidence: WBPaper00002751
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00000373
      WBStrain00000826
      WBStrain00003933
      WBStrain00004367
      WBStrain00005195
      WBStrain00005198
      WBStrain00005199
      WBStrain00005507
      WBStrain00005521
      WBStrain00006180
      WBStrain00006215
      WBStrain00007143
      WBStrain00008469
      WBStrain00008470
      WBStrain00008482
      WBStrain00008485
      WBStrain00008487
      WBStrain00008488
      WBStrain00008489
      WBStrain00008492
      WBStrain00008493
      WBStrain00008504
      WBStrain00008505
      WBStrain00008606
      WBStrain00022737
      WBStrain00022738
      WBStrain00026576
      WBStrain00027000
      WBStrain00027071
      WBStrain00027209
      WBStrain00027273
      WBStrain00027369
      WBStrain00027374
      WBStrain00027383
      WBStrain00029186
      WBStrain00034370
      WBStrain00034440
      WBStrain00035101
      WBStrain00035102
      WBStrain00035103
      WBStrain00035104
      WBStrain00035106
      WBStrain00035110
      WBStrain00040214
      WBStrain00047716
      WBStrain00047717
      WBStrain00051502
      WBStrain00051503
      WBStrain00056334
      WBStrain00056337
      WBStrain00056338
      WBStrain00056344
      WBStrain00057138
      WBStrain00057197
    Laboratory: CB
      DR
      ZHY
      MTS
    Status: Live
  Affects: Gene: WBGene00006808
      WBGene00305285
      WBGene00305247
    Transcript: C01G10.11f.1 VEP_consequence: frameshift_variant
        VEP_impact: HIGH
        HGVSc: C01G10.11f.1:c.593_603del
        HGVSp: CE45243:p.Met198ThrfsTer7
        cDNA_position: 717-727
        CDS_position: 593-603
        Protein_position: 198-201
        Exon_number: 7/12
        Codon_change: aTGATGACGGAT/a
        Amino_acid_change: MMTD/X
      C01G10.11d.1 VEP_consequence: frameshift_variant
        VEP_impact: HIGH
        HGVSc: C01G10.11d.1:c.173_183del
        HGVSp: CE45251:p.Met58ThrfsTer7
        cDNA_position: 173-183
        CDS_position: 173-183
        Protein_position: 58-61
        Exon_number: 2/5
        Codon_change: aTGATGACGGAT/a
        Amino_acid_change: MMTD/X
      C01G10.11b.1 VEP_consequence: frameshift_variant
        VEP_impact: HIGH
        HGVSc: C01G10.11b.1:c.593_603del
        HGVSp: CE39211:p.Met198ThrfsTer7
        cDNA_position: 604-614
        CDS_position: 593-603
        Protein_position: 198-201
        Exon_number: 7/10
        Codon_change: aTGATGACGGAT/a
        Amino_acid_change: MMTD/X
      C01G10.11a.1 VEP_consequence: frameshift_variant
        VEP_impact: HIGH
        HGVSc: C01G10.11a.1:c.593_603del
        HGVSp: CE39210:p.Met198ThrfsTer7
        cDNA_position: 601-611
        CDS_position: 593-603
        Protein_position: 198-201
        Exon_number: 7/11
        Codon_change: aTGATGACGGAT/a
        Amino_acid_change: MMTD/X
      C25D7.19
      C01G10.20
      C01G10.11c.1 VEP_consequence: frameshift_variant
        VEP_impact: HIGH
        HGVSc: C01G10.11c.1:c.320_330del
        HGVSp: CE45264:p.Met107ThrfsTer7
        cDNA_position: 320-330
        CDS_position: 320-330
        Protein_position: 107-110
        Exon_number: 4/7
        Codon_change: aTGATGACGGAT/a
        Amino_acid_change: MMTD/X
    Interactor: WBInteraction000052100
  Genetics: Interpolated_map_position: V 7.32233
    Mapping_data: In_2_point (13)
      In_multi_point (64)
      In_pos_neg_data: 4288
        4289
        4290
        4304
  Description: Phenotype (30)
    Phenotype_not_observed: WBPhenotype:0001426 Paper_evidence: WBPaper00004883
        Curator_confirmed: WBPerson712
        Phenotype_assay: Genotype: arIs37 Paper_evidence: WBPaper00004883
              Curator_confirmed: WBPerson712
      WBPhenotype:0001645 Paper_evidence: WBPaper00040284
        Curator_confirmed: WBPerson2987
        Remark: Table S2 Paper_evidence: WBPaper00040284
            Curator_confirmed: WBPerson2987
      WBPhenotype:0001652 Paper_evidence: WBPaper00032446
        Curator_confirmed: WBPerson2021
      WBPhenotype:0001660 Paper_evidence: WBPaper00006052
        Curator_confirmed: WBPerson2021
        Remark: No disruption of ASE asymmetry (as seen with lim-6 and gcy-7 reporters) Paper_evidence: WBPaper00006052
            Curator_confirmed: WBPerson2021
        Phenotype_assay: Genotype: otIs114, otIs6, otIs3 Paper_evidence: WBPaper00006052
              Curator_confirmed: WBPerson2021
  Reference (19)
  Remark: Variation stub/paper connection generated from the May 2021 NN VFP dataset.
    Created by WBPerson51134 from the NN_VFP_triage_pipeline
  Method: Deletion_allele