WormBase Tree Display for Variation: WBVar00144303
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WBVar00144303 | Evidence | Paper_evidence | WBPaper00027140 | ||||
---|---|---|---|---|---|---|---|
Name | Public_name | e1787 | |||||
Other_name | Y34D9B.1b.1:c.841C>T | ||||||
Y34D9B.1a.1:c.829C>T | |||||||
CE24204:p.Gln281Ter | |||||||
CE24203:p.Gln277Ter | |||||||
HGVSg | CHROMOSOME_I:g.949947G>A | ||||||
Sequence_details | SMap | S_parent | Sequence | Y34D9B | |||
Flanking_sequences | ttgagccattcaaaaagaattttgaagttc | aaatctcgtgcaccgactacacccatcacc | |||||
Mapping_target | Y34D9B | ||||||
Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00027140 | ||
SeqStatus | Sequenced | ||||||
Variation_type | Allele | ||||||
Origin | Species | Caenorhabditis elegans | |||||
Strain | WBStrain00004471 | ||||||
WBStrain00008499 | |||||||
WBStrain00008500 | |||||||
WBStrain00008502 | |||||||
WBStrain00008506 | |||||||
Laboratory | CB | ||||||
Status | Live | ||||||
Affects | Gene | WBGene00003238 | |||||
Transcript | Y34D9B.1a.1 | VEP_consequence | stop_gained | ||||
VEP_impact | HIGH | ||||||
HGVSc | Y34D9B.1a.1:c.829C>T | ||||||
HGVSp | CE24203:p.Gln277Ter | ||||||
cDNA_position | 883 | ||||||
CDS_position | 829 | ||||||
Protein_position | 277 | ||||||
Exon_number | 8/11 | ||||||
Codon_change | Caa/Taa | ||||||
Amino_acid_change | Q/* | ||||||
Y34D9B.1b.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | Y34D9B.1b.1:c.841C>T | ||||||
HGVSp | CE24204:p.Gln281Ter | ||||||
cDNA_position | 978 | ||||||
CDS_position | 841 | ||||||
Protein_position | 281 | ||||||
Exon_number | 8/11 | ||||||
Codon_change | Caa/Taa | ||||||
Amino_acid_change | Q/* | ||||||
Interactor | WBInteraction000000780 | ||||||
WBInteraction000500064 | |||||||
WBInteraction000500065 | |||||||
WBInteraction000500486 | |||||||
WBInteraction000500490 | |||||||
WBInteraction000500491 | |||||||
WBInteraction000524025 | |||||||
WBInteraction000524200 | |||||||
WBInteraction000524382 | |||||||
WBInteraction000538637 | |||||||
WBInteraction000538646 | |||||||
WBInteraction000538651 | |||||||
WBInteraction000538655 | |||||||
WBInteraction000538662 | |||||||
Genetics | Interpolated_map_position | I | -17.492 | ||||
Mapping_data | In_multi_point | 1241 | |||||
3434 | |||||||
3435 | |||||||
Description | Phenotype (15) | ||||||
Phenotype_not_observed (12) | |||||||
Reference (16) | |||||||
Method | Substitution_allele |