WormBase Tree Display for Variation: WBVar00144920
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WBVar00144920 | Evidence | Paper_evidence | WBPaper00026735 | |||||
---|---|---|---|---|---|---|---|---|
Name | Public_name | e2689 | ||||||
Other_name | M02B1.1a.1:c.388C>T | |||||||
M02B1.1c.1:c.16C>T | ||||||||
M02B1.1b.1:c.268C>T | ||||||||
CE43555:p.Gln130Ter | ||||||||
CE45668:p.Gln6Ter | ||||||||
CE37656:p.Gln90Ter | ||||||||
HGVSg | CHROMOSOME_IV:g.12851646C>T | |||||||
Sequence_details | SMap | S_parent | Sequence | M02B1 | ||||
Flanking_sequences | gtttgcattcccgccatgatctacatagtt | aaaataatcttttctacgtggcagcttcac | ||||||
Mapping_target | M02B1 | |||||||
Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00013440 | |||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00004702 | |||||||
Laboratory | CB | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00005153 | ||||||
Transcript | M02B1.1b.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | |||||||
HGVSc | M02B1.1b.1:c.268C>T | |||||||
HGVSp | CE37656:p.Gln90Ter | |||||||
cDNA_position | 268 | |||||||
CDS_position | 268 | |||||||
Protein_position | 90 | |||||||
Exon_number | 3/6 | |||||||
Codon_change | Caa/Taa | |||||||
Amino_acid_change | Q/* | |||||||
M02B1.1a.1 | VEP_consequence | stop_gained | ||||||
VEP_impact | HIGH | |||||||
HGVSc | M02B1.1a.1:c.388C>T | |||||||
HGVSp | CE43555:p.Gln130Ter | |||||||
cDNA_position | 400 | |||||||
CDS_position | 388 | |||||||
Protein_position | 130 | |||||||
Exon_number | 5/9 | |||||||
Codon_change | Caa/Taa | |||||||
Amino_acid_change | Q/* | |||||||
M02B1.1c.1 | VEP_consequence | stop_gained | ||||||
VEP_impact | HIGH | |||||||
HGVSc | M02B1.1c.1:c.16C>T | |||||||
HGVSp | CE45668:p.Gln6Ter | |||||||
cDNA_position | 16 | |||||||
CDS_position | 16 | |||||||
Protein_position | 6 | |||||||
Exon_number | 1/4 | |||||||
Codon_change | Caa/Taa | |||||||
Amino_acid_change | Q/* | |||||||
Interactor | WBInteraction000008514 | |||||||
Genetics | Interpolated_map_position | IV | 6.37322 | |||||
Description | Phenotype (2) | |||||||
Phenotype_not_observed | WBPhenotype:0001384 | Paper_evidence | WBPaper00024246 | |||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Brood sizes were not significantly different between populations of mutants grown on E.coli versus grown on M. nematophilum, whereas there is a 50% decrease in brood size for N2 worms. | Paper_evidence | WBPaper00024246 | |||||
Curator_confirmed | WBPerson712 | |||||||
Phenotype_assay | Treatment | Animals were grown on plates containing 0.1% Microbacterium nematophilum CBX102. | Paper_evidence | WBPaper00024246 | ||||
Curator_confirmed | WBPerson712 | |||||||
Reference | WBPaper00024246 | |||||||
WBPaper00026735 | ||||||||
Method | Substitution_allele |