WormBase Tree Display for Variation: WBVar00145021
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WBVar00145021 | Evidence | Paper_evidence | WBPaper00028462 | ||
---|---|---|---|---|---|
Name | Public_name | e2825 | |||
Other_name | T06H11.1f.1:c.413-1385_561+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | ||||
T06H11.1d.1:c.293-1385_441+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | |||||
T06H11.1e.1:c.67+356_216+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | |||||
T06H11.1g.1:c.137-1385_285+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | |||||
T06H11.1c.1:c.149-1385_297+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | |||||
T06H11.1b.1:c.263-1385_411+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | |||||
HGVSg | CHROMOSOME_X:g.10108953_10110716delinsACGGTAGTTTCAGAAAAATTAGTTTTCAGCCTCAGAAGTCGCGGGGCCGCGCCGGAGGTGCGGTCCACGGCTGGTTTTTTAATATTTGGATTCCATGGGACCATTCTGTTTTGTTTCTATTTTTTGGTTTTTAATAGCAGATCGAATTCCAGTTAGACTATCTTTAGCAAAATACTCTACAAATTTGGTTCATTGG | ||||
Sequence_details | SMap | S_parent | Sequence | T06H11 | |
Flanking_sequences | caatagggttacggtaggagtgctgtatga | taattcagaattttgaagactcttgttcac | |||
Mapping_target | T06H11 | ||||
Type_of_mutation (2) | |||||
SeqStatus | Sequenced | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Laboratory | CB | ||||
Status | Live | ||||
Affects | Gene | WBGene00006792 | |||
Transcript | T06H11.1b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||
VEP_impact | HIGH | ||||
HGVSc | T06H11.1b.1:c.263-1385_411+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | ||||
Intron_number | 3-4/12 | ||||
Exon_number | 4/13 | ||||
T06H11.1g.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | T06H11.1g.1:c.137-1385_285+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | ||||
Intron_number | 2-3/12 | ||||
Exon_number | 3/13 | ||||
T06H11.1f.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | T06H11.1f.1:c.413-1385_561+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | ||||
Intron_number | 4-5/14 | ||||
Exon_number | 5/15 | ||||
T06H11.1e.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | T06H11.1e.1:c.67+356_216+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | ||||
Intron_number | 2-3/13 | ||||
Exon_number | 3/14 | ||||
T06H11.1d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | T06H11.1d.1:c.293-1385_441+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | ||||
Intron_number | 1-2/11 | ||||
Exon_number | 2/12 | ||||
T06H11.1a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
VEP_impact | HIGH | ||||
Intron_number | 1-2/11 | ||||
Exon_number | 1-2/12 | ||||
T06H11.1c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | T06H11.1c.1:c.149-1385_297+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | ||||
Intron_number | 2-3/13 | ||||
Exon_number | 3/14 | ||||
Genetics | Interpolated_map_position | X | 1.74812 | ||
Reference | WBPaper00028462 | ||||
Method | Deletion_and_insertion_allele |